| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1128 |
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| Symbol | truD |
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| ID | 3716552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 1304746 |
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| End bp | 1305804 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_346860 |
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| Protein GI | 77457355 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAC TGCAACTGCT CGGCCCGCGG GCCTATGGCG ACGCCCTCGG CACCGCGGTA
CTGAAAGCCA TCGCTGAAGA TTTCCAGGTC GATGAAGTCC TCGATATTCC GTTCAGCGGT
GACGGCGAGC ACCTGTGGAT CTGGGTGGAA AAGCGCGGCC TGAATACCGA AGAGGCTGCA
CGCCGTATCG CCAAGGCGGC CGGTGTACCG TTGCGTACGG TGAGCTATGC CGGTCTGAAA
GACCGTCAGG CGCTGACCCG TCAGTGGTTC AGCGTGCAAT TGCCGGGCAA GGCTGATCCG
GATCTGTCGG CGGCGGAAAA CGACACGCTG AAAATCCTCA AGACCACTCG CCACAAGCGC
AAGCTGCAAC GCGGTGCGCA TTCGGCAAAC GGTTTCACCC TGCGCCTGAC CCAGTTCAAT
GGCGACAAGG CGGCCATCGA CGAGCGCCTG CAACTGATCG CCAAACAAGG TATTCCGAAT
TACTTCGGCG CCCAGCGTTT CGGCCATGAT GGCGGTAACG TCGTCGATGC CCGTTCGTGG
GCCGCGCGCA AGGCACTGCC GGAGCAGCGC AATGTGCGCT CGCGCCTGCT GTCGACCGCG
CGCAGTTTTC TGTTCAATCA GGTGCTCGCG GCGCGGGTGG CCGATGGCAC CTGGCAGCGC
GCCCAGGTCG GCGATCTGCT GGCCTTCACC GACAGCCGCA GCTTTTTTCC GGCTGGTGAA
GCCGAGTGCA GCGATCCGCG TCTGGCCATT CTTGACCTGC ACCCGACCGG TCCGCAGTGG
GGCGAAGGTG ACTCGCCGGC GGCCGGGGTT GTCCATGATC TGGAGCAGGG GATTGCCGCA
CGCGAGGCGG ATCTGCGCGA TTGGTTGATT AATGCCGGTA TGAGCCACGA ACGTCGCATC
CTGCGGCTGC CCATTGGCGG GTTGACGTGG CATTATCCCG AGCCTGACAT TCTGCAACTG
GAATTCGTCC TCCCGGCCGG ATGCTTCGCC ACCGTATTGG TGCGCGAGCT CGTTGATCTG
GTGCCGGTGG GGCAGACGGA CAGCCCATGC GTATTCTGA
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| Protein sequence | MNELQLLGPR AYGDALGTAV LKAIAEDFQV DEVLDIPFSG DGEHLWIWVE KRGLNTEEAA
RRIAKAAGVP LRTVSYAGLK DRQALTRQWF SVQLPGKADP DLSAAENDTL KILKTTRHKR
KLQRGAHSAN GFTLRLTQFN GDKAAIDERL QLIAKQGIPN YFGAQRFGHD GGNVVDARSW
AARKALPEQR NVRSRLLSTA RSFLFNQVLA ARVADGTWQR AQVGDLLAFT DSRSFFPAGE
AECSDPRLAI LDLHPTGPQW GEGDSPAAGV VHDLEQGIAA READLRDWLI NAGMSHERRI
LRLPIGGLTW HYPEPDILQL EFVLPAGCFA TVLVRELVDL VPVGQTDSPC VF
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