Gene Pfl01_1116 details

Gene Information

• Locus tag: Pfl01_1116
• Symbol: dnaE
• ID: 3716540
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas fluorescens Pf0-1
• Kingdom: Bacteria
• Replicon accession: NC_007492
• Strand: +
• Start bp: 1289769
• End bp: 1293290
• Gene Length: 3522 bp
• Protein Length: 1173 aa
• Translation table: 11
• GC content: 61%
• Product: DNA polymerase III subunit alpha
• Protein accession: YP_346848
• Protein GI: 77457343

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGGCTT CATTCGTTCA TCTACGCCTG CACACTGAAT ACTCCCTGGT CGACGGGCTG 
GTGCGGATCA AGCCGTTGGT CAAGGCCCTG ACCGGCATGG GCATGCCGGC CGTTGCGGTG 
ACCGACCAGA ACAACATGTG TTCGCTGGTC AAATTCTATA AAAACACCAT GGGCGCCGGG 
ATCAAGCCGA TCTGCGGCGC CGACCTGTGG CTGTCGAACA AGGACCCGGA TGGGCCGCTA 
AGCCGGATCA GCCTGCTGGT CATGAATGCC CAGGGCTATC GCAACCTGAC CGAGCTGATT 
TCCCGTGGCT TCATCGACGG TCAGCGTAAC GGCATGGTCA TCATCGAGCG CGAGTGGGTC 
GCTGAGGCCA ACGAAGGCCT GATCATGCTG TCCGCCGCGA AAGAAGGCGA GATCGGCATG 
GCCATGATCG GCGGCAACCC CGCCGAAGCC GAGGCGCTGG CCCGCGAATG GATGGCGGTG 
TTCCCGGATC GTTTCTATCT GGAAGTTCAG CGTACCAACC GTCCGAACGA CGAAGAACAG 
TTGCACGGTG CCGTGGCCCT GGCCGACAAG CTCGGCGCGC CGTTGGTAGC TACAAACGAC 
GTACGCTTCA TCAAGCAGGA AGACTTCGCC GCTCACGAAA CCCGCGTCTG CATCGGTGAG 
GGCCGGGCCC TCGACGATCC GCGGCGTTCG AAGAACTACA GTGATCAGCA GTACCTGAAA 
AGCGCCGAAG AAATGGCCGA GCTGTTCAGC GACCTGCCGG ATGCGATCGA GAACACCGTC 
GAGATCGCCA AGCGCTGCAA CATCGACGTG AAGCTGGGCA AGCACTTCCT GCCCGACTAT 
CCAATTCCCG ATGGCATGAC CATCGACGAG TATTTCCGCA AGGTCTCTTT CGATGGCCTG 
GAAGAACGCC TCAGCGTGCT GCTGCCCAAG GACACCACCG AGGACTACGA GGCCAAGCGT 
CAGGTCTACG TCGACCGGCT GAATTTCGAG CTGGATATCA TCATCCAGAT GGGGTTCCCC 
GGTTACTTCC TGATCGTGAT GGACTTTATC CAGTGGGCCA AGAACAACGG CGTGCCGGTG 
GGCCCAGGCC GGGGGTCGGG TGCCGGATCG CTGGTGGCCT ATGTGCAAAA GATCACCGAC 
CTCGACCCGC TGGAATATGA CCTGCTGTTC GAACGTTTCC TCAACCCGGA ACGGGTATCG 
ATGCCCGACT TCGACGTCGA CTTCTGCATG GATGGTCGCG ACCGGGTGAT CGATTACGTG 
GCCGAAAAAT ACGGCCGCAA TGCGGTGAGC CAGATCATCA CCTTCGGTTC CATGGCGGCG 
AAGGCTGTGG TGCGGGACGT GGCGCGGGCC CAGGGCAAGT CGTTCGGCCT GGCGGATCGC 
CTGTCGAAGA TGATTCCGTT CGAAGTCGGC ATGACCCTTG AAAAAGCCTA CGAGCAGGAA 
GAAATCCTGC GCGACTTCAT CAAGGTCGAT GAGGAAGCGG CGGAAATCTG GGAGATGGCG 
CGCAAGCTCG AAGGCGTGGT GCGTAACGTC GGTAAACACG CCGGTGGTGT GGTGATCGCG 
CCGACCAAGC TGACCGACTT CTCGCCGATT TACTGCGACG AGGCCGGCGA CGGTCTGGTG 
ACCCAGTTCG ACAAGGACGA CGTCGAGGCG GCCGGTCTGG TGAAGTTCGA CTTCCTCGGC 
CTGCGGACCC TGACGATCAT CGACTGGGCG CTGAAGACCA TCAACCGCGA CCGCGCCAAG 
GTCAACGAGC CGCCGCTGGA CATCGCGTTC ATCCCGCTGG ATGACAAGCC GACTTATCAG 
CTGCTGCAAA AGGCTGAAAC CACCGCGGTG TTCCAGCTCG AATCCCGCGG CATGAAAGAG 
CTGATCAAAA AGCTCAAGCC CGACTGCCTC GAAGACTTGA TCGCACTGGT GGCCCTGTTC 
CGTCCGGGCC CGCTGCAATC AGGCATGGTG GATGACTTCA TCAACCGTAA GCACGGTCGC 
GCGGAACTTG CGTATCCGCA CCCGGATTAC CAGTACGAAG GTTTGCAGCC GGTACTGGCA 
CCGACCTACG GCATCATCCT GTATCAGGAA CAGGTGATGC AGATCGCCCA GGTCATGGCC 
GGTTATACCC TCGGTGGCGC GGACATGCTG CGTCGGGCGA TGGGCAAGAA GAAGCCCGAG 
GAAATGGCCA AGCAGCGTGG CGGTTTCATT GAGGGTTGTG CGTCGAACAA TATCGACGCG 
GATCTGGCCG GTAACATTTT CGACCTGGTG GAAAAGTTCG CCGGTTACGG CTTCAACAAA 
TCCCACTCCG CCGCCTACGG CCTGGTCTCG TATCAGACTG CCTGGCTGAA GGCTCACTAC 
CCGGCGCCGT TCATGGCTGC GGTACTGTCG GCGGACATGC ACAACACCGA CAAGGTCGTG 
ACCTTGATCG AGGAAGTGCG CACGATGAAG CTGCGCCTCG ATGCGCCGGA CGTGAACACG 
TCGGAATTCA AGTTCACGGT GAACGACGAG GGACGCATCG TGTACGGCCT GGGCGCGATC 
AAAGGCGTCG GTGAAGGCCC GGTGGAAGCG ATCACCGAGG CCCGTCAGGC CGGTCCGTTC 
AAGGACCTGT TCGACTTCTG CGCCCGAGTT GACCTCAAGC GTATCAACAA GCGCACGCTG 
GACGGTCTGA TCCGCAGCGG TGCGCTGGAT CGCCTCGGCC CGTACTTCCA CGACGAGCAG 
AAGGCCTATC AGGCCAACAT CGACCGCAAC CGTGCCGTTC TGCTGGCGGC GATGGAAGAG 
GCGATCAAGT CGGCCGAGCA GACCGCGCGC ACCCGTGACA GCGGCCACGC CGACCTGTTT 
GGCGGGCTGT TCGTCGAGGA AGACGCGGAC GTTTACGCGG TTCATCGCAA GGCGAAAGAG 
CTGACCCTCA AGGAACGGCT CAAAGGTGAA AAAGACACCT TGGGCCTGTA CCTGACCGGT 
CACCCGATCG ACGAGTACGA AGGCGAAATT CGCCGATTCG CCCGTCAGCG CATCATCGAC 
CTGAAACCGG CCCGGGATAC CCAGACCGTG GCGGGGATGA TCATCGCCCT GCGGGTGATG 
AAGAACAAAA AGGGCGACAA GATGGGCTTC ATCACCCTCG ACGACCGCTC CGGGCGGATC 
GAGGCGTCGC TGTTTGCCGA TGCGTTCCAT TCTGCGCAAT CGCTGTTGCA GACCGATGCG 
ATGGTGGTGG TCGAAGGCGA GGTCAGCAAC GACGACTTCT CCGGCGGCCT GCGCCTGCGG 
GTCAAGCGGG TGATGAGCAT GGAAGATGCG CGCACCAATC TGGCCGAGAG CCTGCGCCTG 
AAGTTGCAGA CCCAGGATCT GAAGGGCGAT CAGCTACGCT GGTTGGGTGA TTTGCTCAAG 
CGTCATCGCG GGGCGTGCCC GATCACCATG GAATACACCA GTCCCGATGC GAAGACCTTG 
CTGCAGTTTG GCGAGACCTG GCGGATCGAC CCGGCGGATG CCTTGATTCA AGCCCTGCGT 
GACCAGTTCG GGCGAGACAA CGTCTTCCTC CAATACCGTT GA 

 

Protein sequence

MPASFVHLRL HTEYSLVDGL VRIKPLVKAL TGMGMPAVAV TDQNNMCSLV KFYKNTMGAG 
IKPICGADLW LSNKDPDGPL SRISLLVMNA QGYRNLTELI SRGFIDGQRN GMVIIEREWV 
AEANEGLIML SAAKEGEIGM AMIGGNPAEA EALAREWMAV FPDRFYLEVQ RTNRPNDEEQ 
LHGAVALADK LGAPLVATND VRFIKQEDFA AHETRVCIGE GRALDDPRRS KNYSDQQYLK 
SAEEMAELFS DLPDAIENTV EIAKRCNIDV KLGKHFLPDY PIPDGMTIDE YFRKVSFDGL 
EERLSVLLPK DTTEDYEAKR QVYVDRLNFE LDIIIQMGFP GYFLIVMDFI QWAKNNGVPV 
GPGRGSGAGS LVAYVQKITD LDPLEYDLLF ERFLNPERVS MPDFDVDFCM DGRDRVIDYV 
AEKYGRNAVS QIITFGSMAA KAVVRDVARA QGKSFGLADR LSKMIPFEVG MTLEKAYEQE 
EILRDFIKVD EEAAEIWEMA RKLEGVVRNV GKHAGGVVIA PTKLTDFSPI YCDEAGDGLV 
TQFDKDDVEA AGLVKFDFLG LRTLTIIDWA LKTINRDRAK VNEPPLDIAF IPLDDKPTYQ 
LLQKAETTAV FQLESRGMKE LIKKLKPDCL EDLIALVALF RPGPLQSGMV DDFINRKHGR 
AELAYPHPDY QYEGLQPVLA PTYGIILYQE QVMQIAQVMA GYTLGGADML RRAMGKKKPE 
EMAKQRGGFI EGCASNNIDA DLAGNIFDLV EKFAGYGFNK SHSAAYGLVS YQTAWLKAHY 
PAPFMAAVLS ADMHNTDKVV TLIEEVRTMK LRLDAPDVNT SEFKFTVNDE GRIVYGLGAI 
KGVGEGPVEA ITEARQAGPF KDLFDFCARV DLKRINKRTL DGLIRSGALD RLGPYFHDEQ 
KAYQANIDRN RAVLLAAMEE AIKSAEQTAR TRDSGHADLF GGLFVEEDAD VYAVHRKAKE 
LTLKERLKGE KDTLGLYLTG HPIDEYEGEI RRFARQRIID LKPARDTQTV AGMIIALRVM 
KNKKGDKMGF ITLDDRSGRI EASLFADAFH SAQSLLQTDA MVVVEGEVSN DDFSGGLRLR 
VKRVMSMEDA RTNLAESLRL KLQTQDLKGD QLRWLGDLLK RHRGACPITM EYTSPDAKTL 
LQFGETWRID PADALIQALR DQFGRDNVFL QYR