Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_0857 |
Symbol | |
ID | 3715590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 1005472 |
End bp | 1006965 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_346589 |
Protein GI | 77457084 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.718619 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCAT CGCTAGTCTT GAGAATGGGC CAGCAGCTGA CGATGACACC GCAGCTGCAA CAGGCCATCC GCCTGCTCCA ATTGTCGACC CTGGATCTGC AACAGGAAAT CCAGGAGGCT CTGGAATCCA ATCCGATGCT CGAACGCCAG GAAGACGGCG ACGACTTCGA CAACTCCGAT CCCATGGCCG ACAACGCCGA ACAGAAGCCC AACACCGAGA TCCAGGAACC TTCCTATCAG GAGACCGCGC CGACAGTCGA CAACCTCGAA GACGGCGAAT GGAACGAGCG CATCCCCAAC GAACTGCCCG TCGACACCGC TTGGGAAGAC GTCTATCAGA CCAGCGCCAG CAGCCTGCCG AGCAGCGATG ATGACGAGTG GGACTTCACC ACCCGCACCT CCGCCGGCGA GAGCCTGCAA AGTCACCTGC TGTGGCAGTT GAACCTTGCC CCGATGTCCG ACACCGATCG CCTGATCGCT GTCACCCTGA TCGATTGCAT CAACAATCAG GGTTACCTCG ACGAAACCCT CGAAGAAATT CTCGACGCCT TCGATCCGGA ACTCGACATC GAGCTGGACG AAATCGAAGC CGTCCTGCAC CGCATCCAGC AGTTCGAACC GGCCGGCATC GGCGCACGCA ACCTGGGCGA ATGCCTGTTG CTGCAATTGC GCCAGCTGTC GGCCAAGACC CCTTGGCTGG CAGAGGCCAA GCGTCTGGTC ACCGATTACA TCGACCTGCT CGGCAGCCGC GACTACAGCC AGCTGATGCG CCGCATGAAG CTCAAGGAAG ACGAACTGCG CCAAGTCATC GAACTGGTGC AGAGCCTCAA CCCGCGCCCC GGCTCTCAGA TCGAATCCAC CGAAGCCGAA TACGTGGTAC CTGACGTCAT CGTACGCAAG GACAACGAGC GCTGGCTGGT CGAGCTGAAC CAGGAATCGG TGCCGCGCCT GCGGGTCAAC GCCCAGTACG CCGGTTTCGT GCGCCGCGCC GACACCAGCG CCGACAACAC CTTCATGCGC AATCAGTTGC AGGAAGCCCG CTGGTTCATC AAGAGCCTGC AGAGCCGCAA CGAAACCCTG ATGAAAGTAG CGACCCAGAT CGTCGAGCAC CAGCGCGGCT TTCTGGAATA CGGCGACGAA GCGATGAAGC CGCTGGTCCT GCATGACATC GCTGAAGCGG TGGGCATGCA CGAGTCGACG ATTTCCCGCG TGACCACGCA AAAGTTCATG CATACCCCGC GAGGCATATA TGAACTGAAA TACTTTTTCT CCAGCCATGT GAGCACTTCA GAAGGCGGTG AATGCTCGTC CACGGCGATC CGCGCGATCA TCAAGAAACT GGTTGCCGCG GAAAATCAGA AAAAGCCGTT GAGTGACAGC AAGATCGCTG GTTTACTGGA GGCACAAGGC ATTCAGGTGG CTCGCCGCAC CGTCGCCAAG TACCGCGAAT CCCTCGGGAT CGCGCCTTCG AGCGAACGCA AGCGGTTGAT GTAA
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Protein sequence | MKPSLVLRMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGDDFDNSD PMADNAEQKP NTEIQEPSYQ ETAPTVDNLE DGEWNERIPN ELPVDTAWED VYQTSASSLP SSDDDEWDFT TRTSAGESLQ SHLLWQLNLA PMSDTDRLIA VTLIDCINNQ GYLDETLEEI LDAFDPELDI ELDEIEAVLH RIQQFEPAGI GARNLGECLL LQLRQLSAKT PWLAEAKRLV TDYIDLLGSR DYSQLMRRMK LKEDELRQVI ELVQSLNPRP GSQIESTEAE YVVPDVIVRK DNERWLVELN QESVPRLRVN AQYAGFVRRA DTSADNTFMR NQLQEARWFI KSLQSRNETL MKVATQIVEH QRGFLEYGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKFM HTPRGIYELK YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENQKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS SERKRLM
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