| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_0783 |
|---|
| Symbol | |
|---|
| ID | 3715359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 918342 |
|---|
| End bp | 920447 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_346515 |
|---|
| Protein GI | 77457010 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00491346 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.157543 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCCGG TAATCAAAAA ATTCCAGTTC GGTCAGTCGA CCGTTACCCT CGAGACTGGC
CGTATCGCCC GTCAGGCCTC CGGCGCAGTA TTGGTCACCG TTGACGACGA CGTCAGCGTA
TTGGTGACCG TAGTCGGTGC CAAGCAAGCC GATCCGGGCA AGGGCTTCTT CCCTCTGTCC
GTTCACTACC AGGAAAAGAC TTACGCTGCC GGTAAGATCC CTGGCGGTTT CTTCAAGCGT
GAAGGCCGTC CTTCCGAGAA AGAAACCCTG ACTTCCCGAC TGATCGACCG TCCGATCCGT
CCACTGTTCC CTGAAGGTTT CATGAACGAA GTGCAGGTTG TCTGCACCGT CGTTTCCACC
AGCAAGAAGA CCGATCCGGA CATCGCTGCG ATGATCGGTA CCTCGGCTGC CCTGGCGATC
TCCGGCATTC CTTTTGACGG CCCGATCGGC GCCGCCCGCG TGGCTTTCCA CGAAAGCACC
GGCTACCTGC TGAACCCGAC TTACGAGCAG CAAGCTGCCT CGAGCCTGGA CATGGTCGTT
GCCGGTACTT CGGACGCCGT GCTGATGGTT GAATCGGAAG CCAAAGAGCT GACCGAAGAC
CAGATGCTGG GCGCAGTACT GTTTGCTCAC GACGAGTTCC AGGTCGTGAT CAACGCCGTT
AAAGAACTGG CTGCCGAAGC GGCCAAGCCA ACCTGGACCT GGGCGCCTGC TCCAGAAGCC
ACCGAGCTGC TGGCTGCTAT CCGTTCCGAG TTCGGCGAAG CGATCTCCCA GGCTTACACC
ATCACCATCA AGGCCGACCG TTATGCGCGT CTGGGCGAGC TGCGTGACCA GGTTGTTGCC
AAGCTGTCCG GTGAAGAAGG CCAGCCTTCG GCTGCCGACG TCAAAGCCGC TTTCGGTGAA
ATCGAATACC GCACCGTTCG CGAAAACATC GTCAACGGCA AGCCACGTAT CGACGGTCGC
GACACCCGCA CCGTACGTCC GCTGAACATC GAAGTCGGCG TTCTGCCGAA GACTCACGGT
TCGGCACTGT TCACCCGTGG TGAAACCCAG GCTCTGGTCG TCGCGACGCT GGGCACTGCC
CGTGACGCAC AACTGCTGGA CACTCTGGAA GGCGAGAAAA AAGACCCGTT CATGCTGCAC
TACAACTTCC CTCCGTTCTC GGTGGGCGAG TGTGGTCGCA TGGGTGGCGC CGGTCGTCGC
GAAATCGGTC ACGGCCGTCT GGCCCGTCGC TCGGTTTCGG CCATGCTGCC TGCCGCTGAC
GTGTTCCCGT ACACCATCCG TGTGGTATCG GAAATCACCG AATCCAACGG TTCGAGCTCG
ATGGCTTCCG TTTGCGGCGC TTCCCTGGCC CTGATGGACG CGGGTGTTCC GATGAAGGCA
CCGGTTGCCG GTATCGCCAT GGGTCTGGTT AAGGAAGGCG AGAAATTCGC CGTCCTGACC
GACATCCTGG GTGACGAAGA CCACTTGGGC GACATGGACT TCAAAGTAGC CGGTACCGCC
AAAGGTGTGA CCGCGCTGCA GATGGACATC AAGATCAAGG GCATCACCGA AGAGATCATG
GAAATCGCTC TGGGCCAAGC CCTGGAAGCG CGCCTGAACA TCCTCGGCCA GATGAACCAG
ATCATCGGCC AGTCGCGTAC CGAACTGTCG GCCAACGCTC CGACCATGAT CGCGATGAAG
ATCGACACCG ACAAGATCCG TGACGTCATC GGTAAAGGCG GCGCGACCAT CCGTGCGATC
TGCGAAGAGA CCAAGGCTTC GATCGACATC GAAGACGACG GTTCGATCAA GATCTTCGGC
GAAACCAAGG AAGCCGCTGA AGCAGCTCGT CAGCGCGTTC TGGGTATCAC CGCAGAGGCC
GAGATCGGCA AGATCTACGT CGGCAAGGTT GAACGCATCG TCGACTTCGG CGCATTCGTC
AACATCCTGC CGGGCAAGGA CGGTCTGGTG CACATCTCGA TGCTGAGCGA CGCTCGCGTA
GAGAAAGTGA CCGACATCCT GAAAGAAGGC CAGGAAGTGG AAGTGCTGGT ACTGGACGTG
GACAACCGCG GCCGTATCAA GCTGTCCATC AAAGACGTGG CAGCTGCCAA GGCTTCGGGC
GTTTAA
|
|---|
| Protein sequence | MNPVIKKFQF GQSTVTLETG RIARQASGAV LVTVDDDVSV LVTVVGAKQA DPGKGFFPLS
VHYQEKTYAA GKIPGGFFKR EGRPSEKETL TSRLIDRPIR PLFPEGFMNE VQVVCTVVST
SKKTDPDIAA MIGTSAALAI SGIPFDGPIG AARVAFHEST GYLLNPTYEQ QAASSLDMVV
AGTSDAVLMV ESEAKELTED QMLGAVLFAH DEFQVVINAV KELAAEAAKP TWTWAPAPEA
TELLAAIRSE FGEAISQAYT ITIKADRYAR LGELRDQVVA KLSGEEGQPS AADVKAAFGE
IEYRTVRENI VNGKPRIDGR DTRTVRPLNI EVGVLPKTHG SALFTRGETQ ALVVATLGTA
RDAQLLDTLE GEKKDPFMLH YNFPPFSVGE CGRMGGAGRR EIGHGRLARR SVSAMLPAAD
VFPYTIRVVS EITESNGSSS MASVCGASLA LMDAGVPMKA PVAGIAMGLV KEGEKFAVLT
DILGDEDHLG DMDFKVAGTA KGVTALQMDI KIKGITEEIM EIALGQALEA RLNILGQMNQ
IIGQSRTELS ANAPTMIAMK IDTDKIRDVI GKGGATIRAI CEETKASIDI EDDGSIKIFG
ETKEAAEAAR QRVLGITAEA EIGKIYVGKV ERIVDFGAFV NILPGKDGLV HISMLSDARV
EKVTDILKEG QEVEVLVLDV DNRGRIKLSI KDVAAAKASG V
|
|---|
| |