Gene Pfl01_0688 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_0688 
Symbol 
ID3714447 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp808400 
End bp811852 
Gene Length3453 bp 
Protein Length1150 aa 
Translation table11 
GC content58% 
IMG OID 
ProductDNA helicase/exodeoxyribonuclease V, gamma subunit 
Protein accessionYP_346421 
Protein GI77456916 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.131155 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGACA CCCAGTCCCT CAACGCTGCA TTCATGGTCG TTCAGAGCAA CAGCCTGGAT 
GAACTGCGCA GCCTTGTGAT CAGCATCATG CGGCGCTATC CACTGGCACC CCTGGAGAAC
GAAATTGCGC TCGTGCAGAG CAACGGCATC GCTCAATGGC TCAAGCTGGC ACTGGCTGAA
GACCCTGAAG CGGACGACTC TGGCGGCTGT GGTATCGCCG CCGCTATTGA TGTGCAACTG
CCGGGCAGTT TCATGTGGCA GCTTTACCGG ATGGTTCTGG GGCGAGAGGA GATTCCGGCA
ACGTCGCTGC TCGATAAGGC ACCATTGACC TGGCGCCTGA TGCGCCTGTT GCCACAGGTC
ATCACCCGAC CCCATTTCGA ACCGCTACAA CGCTTCCTCA TCCATGACAC CGATCTGCGC
AAGCGTTACC AGTTGTCCGA ACGTCTGGCA GACCTCTTTG ACCAATATCA GGTTTACCGC
GCTGATTGGC TTGAGGATTG GGCAGAGGGG CATCATCAAC TACGCAATGT GAGGGGTGAA
GCGAAGCCGC TTCCTCCGAC CAGTTGCTGG CAGGCAGAGT TGTGGCGTGC CCTGCTGGAC
GATGTGGGCG AGCAAGGCAT GGCTCAAAGT CGGGCGGGCG TGCACCAGCG GTTCATGGAG
CGCATCAACA GTCTTGAACG CGCACCGACC GGACTTCCCC AGCGAGTGAT CGTTTTCGGA
ATTTCCTCGT TGCCAGCCCA GGTACTGGAG GCATTGGCCG GGCTTTCCCG TTTCAGCCAG
GTTTTGTTGT GCGTCCATAA CCCCTGTCGT TATCACTGGG CCGATATCGT TGCCGACAAG
GATCTCTTGC GCCATCAGTA CAAGCGGCAA GCCCGAAAAA ACGGTATGCC CGTAGTGCTG
GATTCGGAAA TGCTCCACCA GCATGCTCAC CCGCTCCTCG CTGCGTGGGG CAAGCAAGGT
CGCGATTACA TCAACCTTCT CGACAGCTAT GACGACCCCG ATAGCTATCG CGCAGCATTT
CGCAATGGAC GTATCGATCT GTTCAGCGAA AACCAGCCGA AGAACATGCT CAATCAGTTA
CAGGACGACA TTCTGGAACT GCGGCCGCTC AACGAGACTC GAGCACTCTG GCCGGCAGTC
GATCTGACTC AAGACGATTC GATCCGCTTT CATATTGCCC ATAGCGCCCA GCGCGAAGTG
GAGATTCTCC ACGACCAGTT GCTGGCACGT TTCAGTGCCA ACCCTCAATT ACGCCCGCGC
GACGTGATCG TGATGGTGCC TGACATCGAT AGTTATGCGC CGCATATTCG CGCCGTATTT
GGGCAGCTGG ATCGTCATGA TCCACGCTTC ATTCCCTTCA CGATGGCCGA TCAGGGGCAG
CGCGGACGGG ATCCATTACT GATCGCTGTC GAGCATCTGC TCAAGCTGCC GGATAGTCGT
TTCCCCGTCA GTGAAATCCT CGACTTGCTT GATGTTCCGG CGTTACGCGC CAGATTTGGT
GTGCAGGAAC GAGACTTGCC GACCCTGCAT CGCTGGATCG AAGGTGCCGG CGTGCGTTGG
GGGATTGATG CCGGGCAACG GGCCGAACTG GGATTGCCCG ACGAACTGGA GCAAAACAGT
TGGCGCTTCG GCCTGCGTCG GATGCTGCTC GGCTATGCCG TCGGCAGTTC CGGAGCCTGT
GGGGATATCG AACCCTACGA TGAAATCGGC GGTCTCGATG CCGCGTTGAT TGGGCCATTG
GTAGCGTTGC TGGATGCACT GGAGCTTTCG CATCAGCAAC TGATGAAACC CGCCCAACCA
CAGGAATGGG GGCATCGGCT TCAGGCGTTG ATGCAACTGT TTTTCAAGCC CGAAGATGAG
CATGACGACT ACCTGCTGGC TCAACTCGAG GAGTTGCGCG AAACCTGGAT GGAAACCTGT
GAGGCCGTCG GTCTGTTGGA CGAGCTGCCA CTGACCGTCG TCCGTGAGGC TTGGCTGGCG
GGGCTGGATC AGGGGCGTCT GTCGCAGCGC TTCCTGGCCG GAGCCGTTAA CTTTTGCACG
CTGATGCCGA TGCGCGCGAT CCCGTTCAAG CTGGTTTGCC TGTTGGGCAT GAACGATGGC
GATTATCCGC GCGCTCAACC GCCGCTGGAC TTCGATCTCA TGGGCAGCGA CTACCGGCCG
GGAGATCGCT CCCGTCGGGA GGATGATCGC TATCTTCTGC TCGAAGCGCT CTTGTCCGCC
CGTCATCAGC TCTACATCAG TTGGGTCGGT CGCAGCATTC GCGACAACAG CGAGCGGCCA
GCCTCTGTGT TGATCGGCCA GTTGCGCGAT CATCTCGCCA ATGGATGGCG ATCGAGCGAC
AACAAAGAGG ATCTCCTGAT TGCCATGACT CAGGAGCATC CGTTGCAGCC ATTCAGTTCG
CGCTACTTCC ATGAGGAAGA CAAACTGTTC AGCTATGCCA GCGAATGGCA GGTGCTGCAT
CAACCTCACG AACAGAACGA CACCGCAACG ATGCTTGTAC CCCATATCCA GGAGGAGCCG
TTGAGTCTGG AACTGCTACA GGACTTCCTG CGCAATCCGG TCCGACACTT TTTCACTCAG
CGACTCAAGG TTTACTTCGA AGCGGCGCAG ATACCTCAGG CTGACGAGGA ACCCTTTGTA
CTGGATGCGT TGCAGCGATA TATGCTCAGT GACAGCTTGC TCGGAGCAGC CTTGAGACAC
CCGGATAATG TTGATCAGGC ACTCGAGTCT CAAGCCCGAC GCCTGCAGAA CAGCGGCCTG
TTGCCCATTG CCGGATTCGG TGAATGCCTT CAGCGAGAGC TGATCGAGCC TTTGCCAGAC
TTGTTGCAGC GATATCAACA GTTGCTGGCG TTATGGCCGA CACCCCTGTC CAACGCCCTA
CCGATCAATT TTGAATGGCA GGAGCTGCGC CTTGAAGGGT GGCTGGGCGG CTTGCACCGG
CGCGCCGATG GCGGCGTACT GTCGGTCACG ACGATCCCGA ACAGCATAGG CTCGATCAAG
AGCCGCAAAT GGCATCGCCT GACCAAGCCC TGGGTCAGCC ACCTTGTCGC GTGTGCCAGT
GGGCTCTCCC TGACGACCGC ACTGGTGGCC AGTGATGACA CGCTCCTTCT TGAACCTCTG
GAACAGACTC GAGCGGGACG GGTTCTTGAG GATCTGCTGC TCGCCTGGCA GACGGGTATG
CGTCAGCCAC TTCCGGTCGC GGTAAAAACG GCTTTTGCAT GGCTGGGGCA GACCGATCCA
GTCAAGGCTG AAGCGGCTGC CCGCAAAACC TATGAGGGTG ATGGTCAGAC CAGCGAAGGC
GAACGTCGGG AAAGCCCGGC TCTGGCCCGA CAGTTCCCCG ACTACGATGC ACTGCAGGCG
GATGAAACCT TCTCCGGTTG GTGTGATGCG CTTTATCGCC CGTTGCTCGA GGCACCTTGG
CACTCATGGA CCCACGAGGA GGCAGGCGCA TGA
 
Protein sequence
MPDTQSLNAA FMVVQSNSLD ELRSLVISIM RRYPLAPLEN EIALVQSNGI AQWLKLALAE 
DPEADDSGGC GIAAAIDVQL PGSFMWQLYR MVLGREEIPA TSLLDKAPLT WRLMRLLPQV
ITRPHFEPLQ RFLIHDTDLR KRYQLSERLA DLFDQYQVYR ADWLEDWAEG HHQLRNVRGE
AKPLPPTSCW QAELWRALLD DVGEQGMAQS RAGVHQRFME RINSLERAPT GLPQRVIVFG
ISSLPAQVLE ALAGLSRFSQ VLLCVHNPCR YHWADIVADK DLLRHQYKRQ ARKNGMPVVL
DSEMLHQHAH PLLAAWGKQG RDYINLLDSY DDPDSYRAAF RNGRIDLFSE NQPKNMLNQL
QDDILELRPL NETRALWPAV DLTQDDSIRF HIAHSAQREV EILHDQLLAR FSANPQLRPR
DVIVMVPDID SYAPHIRAVF GQLDRHDPRF IPFTMADQGQ RGRDPLLIAV EHLLKLPDSR
FPVSEILDLL DVPALRARFG VQERDLPTLH RWIEGAGVRW GIDAGQRAEL GLPDELEQNS
WRFGLRRMLL GYAVGSSGAC GDIEPYDEIG GLDAALIGPL VALLDALELS HQQLMKPAQP
QEWGHRLQAL MQLFFKPEDE HDDYLLAQLE ELRETWMETC EAVGLLDELP LTVVREAWLA
GLDQGRLSQR FLAGAVNFCT LMPMRAIPFK LVCLLGMNDG DYPRAQPPLD FDLMGSDYRP
GDRSRREDDR YLLLEALLSA RHQLYISWVG RSIRDNSERP ASVLIGQLRD HLANGWRSSD
NKEDLLIAMT QEHPLQPFSS RYFHEEDKLF SYASEWQVLH QPHEQNDTAT MLVPHIQEEP
LSLELLQDFL RNPVRHFFTQ RLKVYFEAAQ IPQADEEPFV LDALQRYMLS DSLLGAALRH
PDNVDQALES QARRLQNSGL LPIAGFGECL QRELIEPLPD LLQRYQQLLA LWPTPLSNAL
PINFEWQELR LEGWLGGLHR RADGGVLSVT TIPNSIGSIK SRKWHRLTKP WVSHLVACAS
GLSLTTALVA SDDTLLLEPL EQTRAGRVLE DLLLAWQTGM RQPLPVAVKT AFAWLGQTDP
VKAEAAARKT YEGDGQTSEG ERRESPALAR QFPDYDALQA DETFSGWCDA LYRPLLEAPW
HSWTHEEAGA