Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_0557 |
Symbol | |
ID | 3712952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 651648 |
End bp | 652412 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | |
Product | Short-chain dehydrogenase/reductase SDR |
Protein accession | YP_346290 |
Protein GI | 77456785 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000000797066 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.366163 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAACA CCCTGTTTAT CACCGGCGCG ACCTCCGGTT TTGGTGAAGC CTGTGCCCGT CGTTTTGCCG AGGCCGGCTG GAAACTGGTG CTGACCGGTC GTCGTGAAGA ACGCCTCAAC GCGCTGTGCG CCGAGCTGTC GAAGCAGACC GAAGTGCATG GTCTGGTGCT GGACGTGCGT GATCGCAAGG CGATGGAGGA GGCGATTGCC AACCTGCCGC CATCGTTCGC CAAGCTGCGC GGCCTGATCA ACAACGCCGG CCTGGCGCTG GGCGTGGACC CTGCACCGAA GTGCGACCTC GATGATTGGG ACACCATGGT CGACACCAAC GTCAAAGGCC TGATGTACAG CACTCGCCTG TTGCTGCCGC GCCTGATCGC CCACGGTCGC GGCGCCGGTA TCATCAACCT CGGTTCCATC GCCGGTAATT ACCCGTACCC GGGCAGCCAC GTTTATGGCG CGACCAAGGC GTTCGTCAAA CAGTTCTCGC TGAACCTGCG CTGCGACCTG CAGGGCACTG GCGTGCGCGT GAGCAACATC GAGCCGGGCC TGTGCGAGAG CGAGTTCTCG CTGGTGCGTT TCGCCGGCGA TCAGGCGCGT TACGACGCCA CCTACGCCGG TGCCGAGCCG ATCCAGCCGC AGGACATCGC CGAGACGATC TTCTGGGTGC TGAACGCGCC GGCGCACATC AACATCAACA GCCTGGAACT GATGCCGGTG AGCCAGACCT GGGCCGGTTT TGCCATCGAG CGCAACAAGG CTTGA
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Protein sequence | MSNTLFITGA TSGFGEACAR RFAEAGWKLV LTGRREERLN ALCAELSKQT EVHGLVLDVR DRKAMEEAIA NLPPSFAKLR GLINNAGLAL GVDPAPKCDL DDWDTMVDTN VKGLMYSTRL LLPRLIAHGR GAGIINLGSI AGNYPYPGSH VYGATKAFVK QFSLNLRCDL QGTGVRVSNI EPGLCESEFS LVRFAGDQAR YDATYAGAEP IQPQDIAETI FWVLNAPAHI NINSLELMPV SQTWAGFAIE RNKA
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