Gene Pfl01_0520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_0520 
Symbol 
ID3713161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp601659 
End bp603080 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content64% 
IMG OID 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_346253 
Protein GI77456748 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0449196 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.49762 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTTC GCGCGTTGGT GGCTGCCGCT GGACTGATGT TGATGGCAGT AACCGTCAAC 
GCTGTGGCCG AGACGAAGGT CAACAGCGTG CGCCTGTGGC GGGCGCCGGA CAACACGCGA
CTGGTGTTCG ACCTGACAGG CCCGGTGCAG CACAGCGTCT TCACGCTGAC CGCGCCGGAT
CGTCTGGTGA TCGATATCAA CGGCGCCACC CTCGGCGCGC CGCTGAATGT GCAGACCGCC
AACACGCCGA TTACCGCCAT GCGTTCGGCC CAGCGCACGC CGACCGACCT GCGGGTGGTC
ATCGACCTGA AAAAAGCCGT CACTCCGAAA AGCTTCTCGC TGGCGCCGAA TGCGCAGTAT
GGCAACCGTC TGGTGGTCGA CCTGTTCGAT AACCCGGCTG ACGCCGCACC AGCGCCTACG
CCTGCGTCGA CCCCAACGGT TGCGACCGTT CCTGCGGTGC CGGTGACGCC GGCCGAGCCT
GCGATCAAAC TGCCACCAGC CCCGGCCGGC AAACGCGACA TCATCGTGGT CATCGACGCC
GGCCACGGTG GCGAAGACCC GGGTGCATCG GGCTCGCGCG GTCAGCGCGA AAAAGACGTG
GTACTGCAGA TCGCCCGTGA GCTGCAGCGT CAGGTCAACG GCATGAAAGG CTTCCGCGCC
GAACTGACCC GTACCGGTGA CTATTTCATC CCGCTGCGCG GCCGTACCGA GATTGCTCGC
AAGAAGGGCG CCGACCTGTT CGTCTCGATC CACGCCGACG CCGCGCCGTC AGCGGCCGCG
TTCGGTGCGT CGGTGTTCGC CCTGTCCGAC CGTGGTGCCA CTTCGGAAAC CGCCCGTTGG
CTGGCCGACA GCGAAAACCG TTCCGACCTG ATCGGCGGTG CCGGCAACGT CAGTCTCGAT
GACAAGGACC GGATGCTGGC CGGTGTTCTG CTCGACCTGT CGATGACCGC CTCGCTGACC
TCCAGCCTCA ACGTCGGCCA GAAAGTCCTG ACCAACATTG GCCGGGTCAC CCCGCTGCAC
AAACAGCGCG TGGAACAGGC CGGGTTCATG GTGCTGAAAT CGCCTGACAT CCCGTCGATC
CTGGTGGAAA CCGGCTTCAT CTCCAACGCC AACGAAGCGA ACAAGCTTTC GGCAGCGAGC
CACCAGCAGG CGCTGGCGCG TTCGATCAGC AGCGGCGTGC GCCAGTTCTT CCAGCAGAAT
CCGCCACCGG GCACTTACAT TGCCTGGCTG CGCGATTCGG GCAAGATCGC TCAAGGGCCG
CGTGACCACC GGGTAGGTCC GGGTGAGACC GTGGCAATGA TTGCCGTGCG TTATCAGATT
TCGCCGGCCA CGCTGCGCAG CGCCAACAAT CTGAAAAGCG ATGATCTGAA AGTCGGTCAG
CACCTGACCA TTCCTGGCAC CGAACTGGCG TCCAAAGAAT GA
 
Protein sequence
MRFRALVAAA GLMLMAVTVN AVAETKVNSV RLWRAPDNTR LVFDLTGPVQ HSVFTLTAPD 
RLVIDINGAT LGAPLNVQTA NTPITAMRSA QRTPTDLRVV IDLKKAVTPK SFSLAPNAQY
GNRLVVDLFD NPADAAPAPT PASTPTVATV PAVPVTPAEP AIKLPPAPAG KRDIIVVIDA
GHGGEDPGAS GSRGQREKDV VLQIARELQR QVNGMKGFRA ELTRTGDYFI PLRGRTEIAR
KKGADLFVSI HADAAPSAAA FGASVFALSD RGATSETARW LADSENRSDL IGGAGNVSLD
DKDRMLAGVL LDLSMTASLT SSLNVGQKVL TNIGRVTPLH KQRVEQAGFM VLKSPDIPSI
LVETGFISNA NEANKLSAAS HQQALARSIS SGVRQFFQQN PPPGTYIAWL RDSGKIAQGP
RDHRVGPGET VAMIAVRYQI SPATLRSANN LKSDDLKVGQ HLTIPGTELA SKE