Gene Pfl01_0250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_0250 
Symbol 
ID3712142 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp294146 
End bp296371 
Gene Length2226 bp 
Protein Length741 aa 
Translation table11 
GC content63% 
IMG OID 
ProductTonB-dependent receptor 
Protein accessionYP_345983 
Protein GI77456478 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.513773 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAACA TTCCTGGGGC GACACACAAA CTGGCGCAAT CGATCCGCGC TGCGGGCTGG 
CTAATCACCG GGCTGGCTGC GCTGCCGCTG CCGGCCGCGT TCGCCGCCGA CAGCACCGAT
CAGGAGCCGA CACTCAAGTC CGTCACGGTC ACCGCCACCC GCCGCGAAGA GTCGCTGCAA
AAGGTCCCGG TGGCGGTGTC GGTGATCGAC GGCGAGCAGT TGGAACGCGA CAACCGCAAC
AGCGTGGCGA GTATCGTCCA GCAAGTGCCG TCGCTGAATT TCCGCACCGG CGCATCGAAC
AAGGACACCT CGTTGTTCGT GCGTGGCGTG GGGACGATTT CCACCTCGCC AGGCGTCGAG
CCGACCGTGG CCACGGTGAT CGATGGCGTG GTCTATGCCC GTCCCGGCCA GTCCACTCTG
GATCTGCTGG ACTTGGAACG CGTCGAAGTT CTGCGCGGCC CGCAAGGCAC GCTGTTCGGC
AAGAACGCTT CGGCCGGCGT GCTGAACATC ACCAGCAAGG CGCCGACCGC CGAGACCCAC
GGCTACATCG ATCAGTCGTA CTACAGCGGC AACGAAAGCC GCACCCGTTT CGGCATCGGC
GGCAGTCTGA TTCCGGACAC GCTCAAGGGC TCGATCAGCA CCTTGTTCGG CACGTACGAC
GGCAACGTCG ACAACCAGCA CAACGGTCAG GAGGTCAACG GCTATAACCA TCGTGGCGTG
CGCGGCAAAC TGGAATTCAC CCCGAACGAC GACATCACCT TCACCCTGAT CGCCGACTAC
ATGCAGTCCC ACGATGACGG CCCCAACGGC GTCGTGACCA AGGCTCTGAC CCCGGCTTTC
GCCAATGCGT TGAGCCCGGT CAGTGCCACC AGCCACAACC GCGACATCAA CACCGACACC
CGTTCCCACG TCGAGGACAC CAACAAGGGC CTGTCCGGCC AGCTCGATTG GCAACTGGGG
GATTACACCC TGACCTCGAT TACCGCGTGG CGCGGCTGGG ACAACACTCA GTATCAGGAT
GGCGACCGCC TCGGCAGGGT GACGGCTGCG TTCTCCGGCA CGGCGGACAA GGGCGATCTG
GCCTTCGATC AGTACTCGCA GGAGCTGCGG CTGGCGTCGC CGAAAGGCGA GTTCCTCGAA
TACGTCGGCG GCCTGTTCTA CATGCACGGC AAGGACGAGG AAACCTATCA GCGCACCCTG
ACGACCACCA CGCGCACTGA TCGCGGCGTC GCCGATTACA GCACCACCAG CGACAGCTAT
GCGGTGTTCG GCGAGAGCAC GCTGAATTTC ACCTCGGACT TTCGTGGCAT CGCCGGCCTG
CGCTACACCC ACGACGATCT CGAATACGAT CACCGTCGCG TCTCCACGTC CGCCACCACC
GTCAGCGGCA TTCAACCGGC CACCCGCAGT TCCGGTTCGG TGGACGAGGA CGGCTGGTCC
GGCCGGCTCG GTTTGCAGTA CGACCTGAGC GATACCGTCA CCACCTACCT GACTTACTCG
CGCGGCTACA AAGGCCCGGC CTACAACGTG TTCTTCAACA TGCAGCCGCG CGATACCGAA
GCGCTGAAAC CGGAAACCTC CAACACCTGG GAGGCGGGGA TCAAAGCCTC GTCCTGGAAC
AATCGCCTGA CAACCAACCT GGCGGTTTTC CACAGCGACT ACGACAACTA TCAGGCGAAC
TTTTTCGACA CCGTCGCCGG GCAAGTCGTA ACGCGCCTGA TCAACGCCGG CAGCGTCAGC
ACCGAGGGTG TGGAACTTGA TTTCGCCCTG CAGGCGACCC AGCAACTGAA GTTCTCCGGC
GCGCTGGCCT ACACCCGCGC CCGCATCGAC GAGTTCGCCT GCCCGGCGGG CGCGGCGGCG
TCGTGCAACG TCAACGGCAA GCCGCTGCCG TTCAGCCCGG ACTGGAAAAG CTACGTGCGG
GCCGACTACA CCATCCCGCT GGATAACGGC CTGGATATCG AACTCGGCAC CGACTACAGC
TGGCAGAGCG AAGTGCAGTA CGACATCAGC CAGAACGCCG ACACCAAGCA GGGCGCCTAC
GGCCTCTGGA ATGCCAGCGT GGCCCTGGCC GATTACACCA ATGGCTGGCG CGTGGCATTG
CTGGGCAAGA ACCTCACCGA CAAGTCGTAT TCGCCATTGC TCGCCAGCGG TGGCAACTAC
ATCTACCGCG CCGTGCCTCG CGACGACGAG CGCTACTTCG GCGTGCAACT GCGCAAGGAC
TTCTGA
 
Protein sequence
MHNIPGATHK LAQSIRAAGW LITGLAALPL PAAFAADSTD QEPTLKSVTV TATRREESLQ 
KVPVAVSVID GEQLERDNRN SVASIVQQVP SLNFRTGASN KDTSLFVRGV GTISTSPGVE
PTVATVIDGV VYARPGQSTL DLLDLERVEV LRGPQGTLFG KNASAGVLNI TSKAPTAETH
GYIDQSYYSG NESRTRFGIG GSLIPDTLKG SISTLFGTYD GNVDNQHNGQ EVNGYNHRGV
RGKLEFTPND DITFTLIADY MQSHDDGPNG VVTKALTPAF ANALSPVSAT SHNRDINTDT
RSHVEDTNKG LSGQLDWQLG DYTLTSITAW RGWDNTQYQD GDRLGRVTAA FSGTADKGDL
AFDQYSQELR LASPKGEFLE YVGGLFYMHG KDEETYQRTL TTTTRTDRGV ADYSTTSDSY
AVFGESTLNF TSDFRGIAGL RYTHDDLEYD HRRVSTSATT VSGIQPATRS SGSVDEDGWS
GRLGLQYDLS DTVTTYLTYS RGYKGPAYNV FFNMQPRDTE ALKPETSNTW EAGIKASSWN
NRLTTNLAVF HSDYDNYQAN FFDTVAGQVV TRLINAGSVS TEGVELDFAL QATQQLKFSG
ALAYTRARID EFACPAGAAA SCNVNGKPLP FSPDWKSYVR ADYTIPLDNG LDIELGTDYS
WQSEVQYDIS QNADTKQGAY GLWNASVALA DYTNGWRVAL LGKNLTDKSY SPLLASGGNY
IYRAVPRDDE RYFGVQLRKD F