Gene RSP_4006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSP_4006 
Symbol 
ID3711781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodobacter sphaeroides 2.4.1 
KingdomBacteria 
Replicon accessionNC_007488 
Strand
Start bp41999 
End bp42733 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content73% 
IMG OID640069332 
ProductShort-chain dehydrogenase/reductase SDR 
Protein accessionYP_345199 
Protein GI77404625 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.563723 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGGGT TCGAGGGGAA GGTGGCGCTG GTGACCGGTG CCGCGGGTGG TATCGGCGGC 
GCGGTGGTGA CGGCGCTCCG TGCCGCGGGT GCGCGCGTGG CGGTGGCCGA CCGCGCGGTG
GCGGGGATCG CGGCCGATCT GCATCTGCCG GGCGACCTGC GCGAGGCGGC TTACGCGGAC
GGGCTGCCGG GCGCGGTGGC GGCGGGGCTG GGCCGGCTCG ACATCGTGGT GAACAATGCG
GGCGTCATCT CCCGCGGCAG GATCACCGAG ACGACGGATG CCGACTGGTC GCTCTCGCTC
GGCGTCAATG TCGAGGCCCC GTTCCGCATC TGCCGCGCGG CGATCCCGCT GATGGCGGCG
GCGGGCGGCG GCGCCATCGT CAATGTGGCC TCCTGCTGGG GGCTGCGGCC GGGGCCGGGC
CATGCGCTCT ACTGCCTGAC GAAGGCCGCG CTCGCCTCGC TCACGCAATG CATGGGGATG
GACCATGCGC CTCAGGGCAT CCGCATCAAC GCGGTCTGCC CGAACGAGGT GAACACGCCG
ATGCTGCGCA CGGGCTTCGC GAAGCGCGGC TTCGACCCGG ATCGGGCGGT GGCGGAGCTG
GGCCGCACCG TGCCTCTGGG CCGCATCGCC GAGCCCGAGG ACATTGCCGA TGTGGTGCTG
TTCCTCGCCT CGGATGCCGC GCGCTACCTC TGCGGCTCTC TCGTCGAGGT CAATGGCGGG
AAGGCCGTCG CATGA
 
Protein sequence
MQGFEGKVAL VTGAAGGIGG AVVTALRAAG ARVAVADRAV AGIAADLHLP GDLREAAYAD 
GLPGAVAAGL GRLDIVVNNA GVISRGRITE TTDADWSLSL GVNVEAPFRI CRAAIPLMAA
AGGGAIVNVA SCWGLRPGPG HALYCLTKAA LASLTQCMGM DHAPQGIRIN AVCPNEVNTP
MLRTGFAKRG FDPDRAVAEL GRTVPLGRIA EPEDIADVVL FLASDAARYL CGSLVEVNGG
KAVA