| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_3968 |
|---|
| Symbol | |
|---|
| ID | 3712016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007488 |
|---|
| Strand | + |
|---|
| Start bp | 85514 |
|---|
| End bp | 86767 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640069371 |
|---|
| Product | ABC branched chain amino acid transporter, periplasmic ligand binding protein |
|---|
| Protein accession | YP_345238 |
|---|
| Protein GI | 77404664 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA GAACCGTTCT GAAGAGCTTC GCCGGAGCCG CCGCGCTTCT GGGGATGAAC
GCCACCTACC TGCGCGCCCA GTCGGGGCCG ATCCGCGTCG GCGCGGCCTT CGCGCTGAGC
GGGGTGGGGG CGCCCGTGGG CAAGCAGATG CTGGCCGGGA CCGAAGTGGC GGCCATGCAG
ATCAACAAGG CCGGAGGCCT CCTCGGCCGC GAGGTCGAGC TCGTGATCCG CGACGACAAA
TACAACAGCT CGGAATCGGT CGCCGTGGCG CGCGAGCTGG CGGGCGACGG GATCAACCTC
CTGCTCGGCG GCTCGCAGAC GGTGACGGCG CTCGGCCTCG CCCCGCTCGC GCCCGAGCTG
AACATGGCGG TCATGATCGT CGCGGCCGCG GGGATGCCCG TCACGCACGA GCTCTTCAAC
CCCAACATCT TCCGGGCCAC GGCCAACAAC TACACGCAAT ACAGCTCGCT CGGCCGGGTG
CTGATCGAGC AGAACCCCGA CGTCCGCACC TGGGTGTCGC TCGCCCCCGA CGGCGACTTC
GGGCGCGACT CGGCGCTCTT CTTCGGCAAG GCCGTCGAGA AATATGCGCC GGGCGAGAAG
CCCACCGTGC TCGACACGAT CTATACCCAG GCCACCGCCA CCGACTTCCG CACCCAGATC
AACCAGCTCA TGAGCTCGGA CGCCGAGGGG CTCTATATCG GCATCGCGGC CTCGGCGCAG
ATCAGCTTCT TCCAGCAGGC GCGCAGCGTC GGCCTCTACG ACAAGTTCAA GGCCATCGGC
GAGGTGGGCA ACGGCGACAT CACCGGCAAG GCGATGGGGC GCAACACGCA CCCGAACCTC
TGGTCGGTCT GCCACTGGAT CTACAATGCC GAGCCCTTCG CGAGCAATCC GGTCAGCAAG
CAGCTCTACG AGGATTATGT GACGCTGAAG GGCGACGAGA TGCCCTCGGC GCAGGTGGCG
GCGGGCCATC GCGCGGCCAT GGCGATCTTC GAGGGCATCC GCGCCGCGGG CTCGACCGAG
ACCGAGGCGG TTCTCGCGGC CATCGAGGAT GTGGAATTCG AGACGGTGGG CGGCCCGGTC
AGCTTCCGCA AGGAAGACCA CCAGCTGGTG AACACCAACT ACTATTCCCA GATGGGGCCG
TCGCGCGAAG AGCCCTTCTT CGCCTTCAAC AAGGTGGTGA GCATCGACGC GGCCGAGATG
ATCGAGCCCG CCACGCCCGG CAAGGCGTTC GACATCTCCG AGCTGCCGCA ATGA
|
|---|
| Protein sequence | MKRRTVLKSF AGAAALLGMN ATYLRAQSGP IRVGAAFALS GVGAPVGKQM LAGTEVAAMQ
INKAGGLLGR EVELVIRDDK YNSSESVAVA RELAGDGINL LLGGSQTVTA LGLAPLAPEL
NMAVMIVAAA GMPVTHELFN PNIFRATANN YTQYSSLGRV LIEQNPDVRT WVSLAPDGDF
GRDSALFFGK AVEKYAPGEK PTVLDTIYTQ ATATDFRTQI NQLMSSDAEG LYIGIAASAQ
ISFFQQARSV GLYDKFKAIG EVGNGDITGK AMGRNTHPNL WSVCHWIYNA EPFASNPVSK
QLYEDYVTLK GDEMPSAQVA AGHRAAMAIF EGIRAAGSTE TEAVLAAIED VEFETVGGPV
SFRKEDHQLV NTNYYSQMGP SREEPFFAFN KVVSIDAAEM IEPATPGKAF DISELPQ
|
|---|
| |