Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSP_3952 |
Symbol | gtpC |
ID | 3712051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides 2.4.1 |
Kingdom | Bacteria |
Replicon accession | NC_007488 |
Strand | - |
Start bp | 99890 |
End bp | 100558 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640069386 |
Product | ABC amino acid transporter, inner membrane subunit |
Protein accession | YP_345253 |
Protein GI | 77404679 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGTCA TCGACTGGGG CTATATCCTC GCGGCCTTCC CCGACCTCAT GCGCGGCCTC GGCATGACCC TCATGGTCAG CCTGCTCGCG ATCCTCTTCT CGCTCCTTCT GGGGCTGGCC GGCTGCGCGC TGCGCGTCTC GGGCATCCGC CCGCTCTCCT ATGCCGTGCG CGGCTATGTC GAGTTCATCC GCGGCACGCC CTATCTCGTG CAGATCTTCT TCGTCTTCTA CGGCCTGCCG AGCCTCGGGC TCACGCTCTC GATCTTCTGG TCGGGGGTGC TCGCCCTCAC GATCTGGGCC AGCGCCTTCC ATATCGAGAG CTTCCGCGCA GGTCTGGCCT CGGTCGGGCG CGAGATGCAC GACGCCTCGG CCTCGCTGGG CCTGCGCCGG CTGCCGCACG CGCTCCTCGT GGTGGCGCCC ATCGCGCTGC GGTCGGCCCT GCCCTCCACG CTGAACACGG TGGTCGGCAC GATCAAGAAC TCGGCCTATC TGCAGGCCAT CGGCCTCGTG GAGCTGACCT TCGTCGCGGT CGACCGGATC GCGCAGGACT TCCGCTCGAC CGAGATGTTC CTCTCGATCT GCGTCATCTA CCTCGTCGTC ATCCTCGGCG TCTCGGCGCT GGGGCACCGG CTGGAACGGC GCCTCAACCG GCCCTACGGG TCACGGTGA
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Protein sequence | MTVIDWGYIL AAFPDLMRGL GMTLMVSLLA ILFSLLLGLA GCALRVSGIR PLSYAVRGYV EFIRGTPYLV QIFFVFYGLP SLGLTLSIFW SGVLALTIWA SAFHIESFRA GLASVGREMH DASASLGLRR LPHALLVVAP IALRSALPST LNTVVGTIKN SAYLQAIGLV ELTFVAVDRI AQDFRSTEMF LSICVIYLVV ILGVSALGHR LERRLNRPYG SR
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