Gene Noc_3080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_3080 
Symbol 
ID3705658 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp3472149 
End bp3472952 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content44% 
IMG OID637739554 
ProductF0F1 ATP synthase subunit A 
Protein accessionYP_345051 
Protein GI77166526 
COG category[C] Energy production and conversion 
COG ID[COG0356] F0F1-type ATP synthase, subunit a 
TIGRFAM ID[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00958832 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGCGCCG AAAGCAATCC CGTAGAATAT ATTAACCACC ATCTCACGAA TTTGTGCATT 
GGTCAGTGCG AGAGCATGGG GTTCTGGAGC TTAAAGCTCG ACACCCTTTT TATCAGCCTT
GGGTTGGCAG CACTGCTAGT CTATGCCAGT TATCGCGTAG GCCGTCATCT TCATTTATCG
GAACCTGGCG GGATGCAGAA TGTGCTAGAG GTCGTCGTTG AATTTGTGGA TCAGCAAGTC
AAGGATATTT TTCCTGGCCG TAACCCCCTT ATTGGACCTC TTGCTATTAC GGTTTTTCTA
TGGGTGTTTT TAATGAATGC CATGGATCTG ATTCCCGTAG ACCTGTTGCC TAAGCTTGCT
GAAGTGATGG GCATTCATGG TTTCAAAGCC GTGCCGACTA CCGAGATTGA TACTACCTTT
GCCTTAGCGC TAACCGTGTT TGCCCTTATT ATTTACTACA ACGTTAAAAT AAAGGGCCCA
CTCGGTTACA TCAAACAATT TCTTTTTCAC CCATTTGGTA AGTATTTGGT CCCTATTAAT
ATCATTATGA CTACCATTGA GGAGGTTGCT AAGCCTGTTT CCCTAGGTCT GCGGCTATTT
GGCAATATGT TTGCTGGTGA GCTTGTTTTT CTACTTATTG CCTTATTGTC GTTAGCAGGT
TTTGGAGCAG CGTGGCTACC TCAGGTCATA CTGGGTACTC TGTGGGCCAT CTTTCATATT
CTAGTGATTA CTATTCAGGC GTTTATTTTT ATGCTGCTCA CCATTGTTTA CCTTGCTATG
GCTCATACTG AGGAAGAACA TTAG
 
Protein sequence
MSAESNPVEY INHHLTNLCI GQCESMGFWS LKLDTLFISL GLAALLVYAS YRVGRHLHLS 
EPGGMQNVLE VVVEFVDQQV KDIFPGRNPL IGPLAITVFL WVFLMNAMDL IPVDLLPKLA
EVMGIHGFKA VPTTEIDTTF ALALTVFALI IYYNVKIKGP LGYIKQFLFH PFGKYLVPIN
IIMTTIEEVA KPVSLGLRLF GNMFAGELVF LLIALLSLAG FGAAWLPQVI LGTLWAIFHI
LVITIQAFIF MLLTIVYLAM AHTEEEH