Gene Noc_3018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_3018 
Symbol 
ID3705765 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp3411288 
End bp3413426 
Gene Length2139 bp 
Protein Length712 aa 
Translation table11 
GC content50% 
IMG OID637739492 
ProductSignal transduction histidine kinase, NtrY 
Protein accessionYP_344990 
Protein GI77166465 
COG category[T] Signal transduction mechanisms 
COG ID[COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGGAGGAC TGCTCCTGCT CTCTTTTTAT CTGCTAGCTG CTGCCCTCGA AGATTCAGCT 
CATTTCGGCC GCCTTTACTT CATCGTACTT GGAGTTAATA TCCTGGCCCT GTTGCTGCTG
CTCTTTTTTA TTGGTACTAA TCTGATCCAG TTAATTCGAG GATACCGGGA ACGCCAACCT
GGTTCGCGGC TCACCGTGCG GGTAGCCGCC ATGTTTATTT CCCTAACTTT CATTCCCTTG
ATCATTGTAT TTTCCTTCTC ATTACAATTT TTACACCGAG GCATTGAAAG CTGGTTTGAT
GTGCAAGTGG AAAAAGCCCT TGAAGATTCC CTAGAACTTA GCCGTACCGC CTTTGGAATT
CGGATGCGGA CTCTACTCAA ACAAACCCAA TTAATGGCGG CCACCTTAGC CGAATTACCC
CTAGAGAAAG CGGCTTACAG CCTCCAGGAA CTCCGCTATA TTAGTGGCGC TCATGAGCTG
ACTTTGCTTA ATACCCGCGG GCAAGTCATT ACCTCAGCTA CCCACGACCC TGAGACCATT
GTCCCAGACC ACCCCAATGA TGTTATCTTA TTTCAGCTCC GCCAAGGGCA AGATTATGTT
GCCCTGGATC CCGTCGGGGA CTCAGGACTG CATTTGCGGG CCGTGGTTAA TTTGCCGGCT
ACGCGCACTG ATACCGAAGC ATTGATATTA CAGGCTTTAT TTCCCATAGC AGACCGATTA
AGCACCCTGG CCGATAGTGT TCAAGATGCT TATGATCAAT ACAAACAGCT AGCTTACCTG
CGCAGACCAC TTATCTATAG CTTTACCTTG ACACTCTCTC TAATCGTACT CCTCACGCTA
CTAGCAGCCG TATGGACAGC ATTTTTTCTA GCACGGCGCT TAGCCTCCCC GGTAACGGAT
CTTGCCCAAG GCACCCGGGC CGTTGCTAGG GGCGACTACG ATACTCAACT ACCTTCCCAC
AGTCACGATG AATTGGGATT TCTCGTGGAC TCTTTCAACC AAATGACGCG GCGTTTGAGT
CAGGCCCGGG ATTCTGCCCA CGCTAGCCAG CAACAACTGG AGAAGCAACG GCGCTATTTA
AAAGCCGTAC TGGGTAGTTT ATCTTCTGGG GTTATTACCC TGGATAATGC GCAACGGATT
CGCACCGCCA ATATTACCGC AGGAGAAATT CTCAGCGTAG ATCTCCGCCG CTATACCGGA
CAAGTTCTAG AGAAGATCGC TCGCCATCAT CCGGAAGTAC AGGAATTTAT CGAATTGCTC
CACCCCTATC TAAAAAGCTG CCATCAGGAA TGGCGCAAAG AAATCATCCG GCATCAGGAA
AATGGCCGTC AATTTCTGAT GTGCCGAGGC GCCCCCCTGC CAGGCGATGC CGGTCAAGTA
ATCGTATTTG ATGATGCCAC CGCCTTTGTC CAAGCGCAGC GGAACGCCGC ATGGGGCGAA
GTCGCCCGAC GCCTAGCCCA TGAGATTAAA AACCCACTCA CGCCTATCCA GCTCTCCGCA
GAACGGCTAC GACGTAAATA TCTTAAACTT CTGCCCACTG ATCAGATCCA GCCCTTAGAT
CGATTAACCC ATACCATTAT TGCCCAGGTA GAGGCCATGA AAGAGATGGT GAATGCTTTT
TCCGAGTATG CTCGCAATCC GGCCCTACAA CAGCAATCAT TGGATTTCAA CAGCTTGGTT
AAAGAAGTAT TGGAACTCTA CCGGGGTGAT GAAAACAAAT TATATATTGA GACCCAACTG
GCTCCCCAAC CCCTTTGGCT GCTAGCCGAT CCCAGCCGTC TACGCCAATT GCTCCATAAT
TTACTCAAAA ATGCACTTGA GGCTATGGCC AATTCTCCAA AAACTCCCCA CATTACCGTC
CAAACCCGCT ACCGTGAAGA CAAAAAAAGA GAGTGGGTAG AACTTCAAAT TATCGATCAA
GGCCCAGGCA TCCCTCCTGA ATTATATCAA AATCTATTTG AACCCTACGT TTCTACGCGT
CCTAAGGGCA CAGGATTAGG GCTGGCCATT GTCAAGCGTA TTGTGGAGGA GCAAGGAGGC
CATGTTGCGG CCAGAAATCC TCCCGGCGGG GGCGCATGTC TCATTATCCA ATTGCCCTGC
CAAACGGCCT CGCAACCCCT CTTGGAGATA CACCGATGA
 
Protein sequence
MGGLLLLSFY LLAAALEDSA HFGRLYFIVL GVNILALLLL LFFIGTNLIQ LIRGYRERQP 
GSRLTVRVAA MFISLTFIPL IIVFSFSLQF LHRGIESWFD VQVEKALEDS LELSRTAFGI
RMRTLLKQTQ LMAATLAELP LEKAAYSLQE LRYISGAHEL TLLNTRGQVI TSATHDPETI
VPDHPNDVIL FQLRQGQDYV ALDPVGDSGL HLRAVVNLPA TRTDTEALIL QALFPIADRL
STLADSVQDA YDQYKQLAYL RRPLIYSFTL TLSLIVLLTL LAAVWTAFFL ARRLASPVTD
LAQGTRAVAR GDYDTQLPSH SHDELGFLVD SFNQMTRRLS QARDSAHASQ QQLEKQRRYL
KAVLGSLSSG VITLDNAQRI RTANITAGEI LSVDLRRYTG QVLEKIARHH PEVQEFIELL
HPYLKSCHQE WRKEIIRHQE NGRQFLMCRG APLPGDAGQV IVFDDATAFV QAQRNAAWGE
VARRLAHEIK NPLTPIQLSA ERLRRKYLKL LPTDQIQPLD RLTHTIIAQV EAMKEMVNAF
SEYARNPALQ QQSLDFNSLV KEVLELYRGD ENKLYIETQL APQPLWLLAD PSRLRQLLHN
LLKNALEAMA NSPKTPHITV QTRYREDKKR EWVELQIIDQ GPGIPPELYQ NLFEPYVSTR
PKGTGLGLAI VKRIVEEQGG HVAARNPPGG GACLIIQLPC QTASQPLLEI HR