| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_3004 |
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| Symbol | |
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| ID | 3705712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 3395949 |
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| End bp | 3396986 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637739478 |
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| Product | pilus retraction protein PilT |
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| Protein accession | YP_344976 |
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| Protein GI | 77166451 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCG CTGAACTACT TGCCTTTAGT GTCAAGAATT CTGCCTCCGA TTTACACATC
TCGGCGGGCC TCCCGCCAAT GATCCGAGTA GACGGCGACG TGCGCCGAAT TAACTTACCG
CCTATGGAGC ACAAGGATGT CCATGCCATG ATCTACGATA TCATGAATGA CAAGCAGCGT
AAGGATTATG AAGAATTTCT GGAGACCGAT TTTTCCTTCG AGATCCCTGG ATTAGCCCGT
TTCCGCGTGA ATGCGTTCAA TCAGAACCGC GGGGCAGCGG CGGTATTCCG CACCATTCCC
TCTCAAGTAC TCACCCTTGA AGAACTCGAT GCCCCCGCCG TATTTAAGAA TATCGCCGAT
AATCCCCGAG GGGTGGTGTT AGTGACCGGG CCTACCGGCT CTGGAAAATC AACTACCTTA
GCGGCTATGG TAAATTATAA AAATGAGAAT GATTTTGCTC ATATTTTAAC GATCGAGGAT
CCCATCGAAT TCGTCCACGA AAGCAAAAAA AGCCTGATTA ATCAACGGGA AGTCCATCGG
GATACCCATG GCTTTAGCGA AGCTCTGCGT TCAGCATTGC GGGAAGACCC TGATATTATT
CTGGTAGGTG AGCTGCGAGA TCTTGAGACT ATTCGTCTCG CATTGACAGC GGCAGAGACG
GGGCATTTAG TCTTCGGCAC TTTGCATACT AGTTCTGCGG CAAAGACTAT TGATCGTATT
ATCGATGTGT TTCCTGCTGC GGAGAAAGAC ATGGTGCGCT CCATGCTCTC CGAATCCCTG
CGGGCCGTAA TTTCCCAGAC TCTCCTTAAA AAATTTGGCG GTGGACGGGT TGCTGCCCAC
GAAATCATGA TTGGCAACCC GGCCATTCGT AATCTCATCC GCGAAGACAA GATCCCACAA
ATGTATTCTG CTATCCAAAC GGGCCAAGAG GCAGGTATGC AGACTCTGGA TCAATGTCTG
TCAGGGTTAC TTCGTCGCAA TATCGTCACT AAGCAGGAGG CAGCTAAGAA AGCCGTAAGC
AAAGAGCTTT TCCAGTAG
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| Protein sequence | MDIAELLAFS VKNSASDLHI SAGLPPMIRV DGDVRRINLP PMEHKDVHAM IYDIMNDKQR
KDYEEFLETD FSFEIPGLAR FRVNAFNQNR GAAAVFRTIP SQVLTLEELD APAVFKNIAD
NPRGVVLVTG PTGSGKSTTL AAMVNYKNEN DFAHILTIED PIEFVHESKK SLINQREVHR
DTHGFSEALR SALREDPDII LVGELRDLET IRLALTAAET GHLVFGTLHT SSAAKTIDRI
IDVFPAAEKD MVRSMLSESL RAVISQTLLK KFGGGRVAAH EIMIGNPAIR NLIREDKIPQ
MYSAIQTGQE AGMQTLDQCL SGLLRRNIVT KQEAAKKAVS KELFQ
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