Gene Noc_2988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2988 
Symbol 
ID3707467 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp3379970 
End bp3381481 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content49% 
IMG OID637739462 
Productlytic transglycosylase 
Protein accessionYP_344960 
Protein GI77166435 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.351153 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTTATC CCTTTGCCGT GATTTTTGTA GGTACCTTGC TATTTTTGAC TAACCCCGTC 
TTAGCTAAGT CATGGGATTT GTTTCCCCGG CCAGCGATGC TAGAACAAGA TATCCGTTTC
TGGACCCGAG TTTACACTGA AATTGATAAT AATCACGGCT TTATCCATGA TAATCGGTAC
CTTAACGTCA TTTATGAAGT AACTCCCCTG CCTATCCATC TAAGCTCCCA GGCCGCTAAG
AAACACCTTC AGGAGCGGCG GCAATACTAT CAAGGGATCT TGCTTCGCCT TGCCGAAGGC
AAGCGGGATA ATCTTACGGA AGAAGAGCGG CGAGTACTCG CACTTTGGCG GCGGAACGTG
AACGATAAAA CACTCCAGGC CGCCGCCTCA AGGCTCCGTT TCCAGCGGGG GCAGGCAAAT
CGTTTTCGTG AAGGATTAGT CCGCGCTGGC GTCTATAAAC CTTTTATCCT CAAAACTTTG
GATTCCCTCG GCCTACCACG GGAACTTGCC GTATTACCCC ATGTAGAGTC CTCATTTGAC
CCAACCGCCT ATTCCCATGC TGGCGCTGCG GGGCTATGGC AGTTCACCCG TCCCACTGGG
CGCCGTTTTA TGCGCATTGA CCATGTGGTA GATGAACGCC TGGATCCCTT CAAGGCCACG
GTGGCCGCCG CCCGTTTGCT TCAGCATAAC TATGAAAAGA CCGGTACCTG GCCCTTAGCT
ATTACCGCTT ACAATCACGG CGTAGCAGGG ATGCAGCGGG CCAAAAAGCA AATGGAAACC
TCGGATATTG TGGCTATCCG GCAAAATTAT AAAAGCCCTA CTTTTGGTTT TGCCTCGCGT
AATTTTTATG TGGCCTTTCT TGCGGCCTTG GAGGTAGATA CCAACGCAAA ACTTTATTTT
GGCCACTTTC AGGCAGATAA ACCAGTAAAA AGTGAGAGTA TAGAACTTAC TGACTTCGTC
CCTGCTCATG CCCTGCAGCG GGTTTTAGGA CTCGATCAAA CCACGCTCAA ACAAAGCAAT
CCTGCCCTGC TCTCGCCCGT TTGGAAAGGC CATAAATACT TGCCTCGGGG CTATGAGCTA
CGTATACCTT GTACCCCCAC TTGTAGTAGA TCTAAAGTGC TAGCCTATCT AGCCCCTTGG
GAACGATTTG AGAAACAAAT ACCGAATCGT TTTCATAAAG TTCAACAGGG ACAAACCCTA
TCTCATATTG CTCGGCGCTA TCGCATTAAT GTCCATCAGC TAGTAAAATT GAATGGGCTT
ACCAACCGCC ATCACATCCG GATGGGACAA ACCCTACAGC TACCTTTCCC TGCCACTGCA
AACAGAAACC ATATTCGCTC AAAGACTGGG CATTACACGG TGCAACGTGG CGATACGCTT
TCTAGAATTG CCCAACGTTT TGGAATGACC CAGCAAGCAC TCCTAAAAAG CAATGATATT
ACCGATAAAC ATCGAATTTA TGCTGGCCAA AATTTACTGC TAGCACAACT CCCTTCCTCC
TCTGAAAACT AG
 
Protein sequence
MPYPFAVIFV GTLLFLTNPV LAKSWDLFPR PAMLEQDIRF WTRVYTEIDN NHGFIHDNRY 
LNVIYEVTPL PIHLSSQAAK KHLQERRQYY QGILLRLAEG KRDNLTEEER RVLALWRRNV
NDKTLQAAAS RLRFQRGQAN RFREGLVRAG VYKPFILKTL DSLGLPRELA VLPHVESSFD
PTAYSHAGAA GLWQFTRPTG RRFMRIDHVV DERLDPFKAT VAAARLLQHN YEKTGTWPLA
ITAYNHGVAG MQRAKKQMET SDIVAIRQNY KSPTFGFASR NFYVAFLAAL EVDTNAKLYF
GHFQADKPVK SESIELTDFV PAHALQRVLG LDQTTLKQSN PALLSPVWKG HKYLPRGYEL
RIPCTPTCSR SKVLAYLAPW ERFEKQIPNR FHKVQQGQTL SHIARRYRIN VHQLVKLNGL
TNRHHIRMGQ TLQLPFPATA NRNHIRSKTG HYTVQRGDTL SRIAQRFGMT QQALLKSNDI
TDKHRIYAGQ NLLLAQLPSS SEN