| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2979 |
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| Symbol | |
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| ID | 3707458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 3369303 |
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| End bp | 3371567 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637739453 |
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| Product | PAS sensor, serine phosphatase RsbU regulator of sigma subunit |
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| Protein accession | YP_344951 |
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| Protein GI | 77166426 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAATCG GCGAAGATAC TGAGATGCCA GTAAACAAAA GGAAGGAGGA ACAGAATTGC
GATCTGCTTT GGGCTCTGCT CAATAATGCC GCCGATGGGA TCATTGTTAT TGATGAAGAA
GGACGCATTA TTCTAACGAA TACAGCTACT GAACATTTTT TTGGTTACCG GCAGCAAGAA
ATGATAGGCC AGGATATGCG CAAGCTCATA CCTGATTATG ATAAATGCCT TACAGATCAT
GAGAAGATCA TTAGTTCTGA ACGCGAGGTC ACGGGCCGGC GTAAGGATGG CAACACTTTC
CTTGCGCATC TATCGATTTC CGAGATTCAG CACGGGGGGC AGCGGCTTTT TGCTGGCGTT
ATTCGCGACT TTACTACGCA CAAGCAGGGT GAAATAGATG CTCAAAGGCT GGCGGCCATC
GTTGAATCAT CCGAAGACGC TATTATTAGC AAGACTCTCG ATGGCATTGT TATTAGCTGG
AATTCCGCTG CCCAGCGAAT ATATGGTTAT AGCGCTGAGG AAATTTGTGG CCAATCTATT
TCTATTCTTG CGCCCCCTGA TCGAGCTGAT GAGATACCCC AAATTCTCCA GCATATCCGG
CGCGGCGAGC GCATTAAGCA GTTTGAGACG GTGCGCATGC GGAAGGATGG CAGAGAAATG
TTCGTTTCTC TTACCATTTC TCCTATCAAA AACAGCCAGG GTTCTATCAC TGGGGCTGCA
ACCATCGCTC GGGATATTAC CCGGCGTAAA CAAAGAGAAG AAAAATTGCT GTGGCTATCC
CGAGCGCTAG AGCAAAGCCC CGTGGCGGTA ACTATTACAG ATACCGCAGG TAATATTCAG
TATGTGAATG CTAAATTCAC TCAATTAACT GGTTACCACC GGGAAGAGAT TATTGGGAGA
AATCCACGCA TCCTGCAATC AGGAAAGACT TCGCTGGAAG AATACCAACA ATTATGGAGC
ACTATTATTT CTGGAAGAGA ATGGCGAGGG GAGATACAAG ACAAAAAAAA GAATGGGGAA
ATCTATTGGA TATTGGAACA AATTTCACCT ATTAAGAACA CTCAAGGTGA AATTACCCAC
TTTCTTGCTA TTGAGGAAGA TATTTCCGAG CGTAAACAAA TTGAAAAGGC CCTTCAAGAG
AGTGAAGAAA GATTTCGTCA GGTTGCTAAG ATGACCGGCG AGTGGATATG GGAACGGGAT
TCTTCCGGGC GTTTCATCTA TTGTAGTGGG GCAGTTAAGG AAATACTGGG CTATGAGCCC
AAGGAAATGT TTGGCAAGCA TTACAGTGAG TTTTTTACCC TAGAAGCTCA GGAGGGCAAA
CCTTGTAAAA GTCCGCAGAG TGGAAAGCGA TTTTTTCGGA TCGTTTGTTG CTATCGCCAC
AAAGATGGCC GTGAAGTTTT TACGGAGTCT AGCGGCGAAC CCCTTCTGGA TGAACGAGGC
CAAATCGTCA AGTGGCGGGG TCTTGATCGA GATATCACCA AACGGCTTGA AGCCCAAGAA
TTGATCCGAC GGGCACAAAT AAGCCTTGCG GTAACACGCA ACGAGTTGAG GATCGCACAG
CAAATCCAAG AATCTTTACT GCCTACGGAA TCTCTGGTGC TGCCTGAAGT CCAGGTTGTT
GGTCATTGTC TCCCTGCCTC TCAGGTAGGA GGAGACTATT TTGATTATTA TTATCGCCAA
TCTGATAATA CCGTGGATGT GACCATTGCC GATGTCTCTG GGCATTCTGT TGGTCCAGCC
CTCTTTATGG TTGAAACCCG TAGCGCGCTG AAAACACAAA TCCGATCAAA ATTCACCGCC
GCTAATACCC TTGCTGCTTT AAATGATTCA CTTTATGAGG ACTTAAATGG AGCTGATCAT
TTCATTACCA TGTTTTATAT GCAGTACCAT ATTGCGACGG GAGAAATTAA TTATGCAAGC
GCAGGCCATA ATCCCCCTTT GCTATTACGC CGTAACGAGG CAGTATGCAA TAAGTTAGAA
GCGGATGGAT TAATTTTTGG AGTTAAAAAA GAAGTTAGCT TTGAAGAGAA GAGAACTTTT
TTAAAAAAGG GAGATCTAGT ATTTCTCTAT ACGGATGGCA TCGTAGAAGC AGAGAGTAAA
CAAGGTGAGT TTTTTGGTAT CCACCGTTTA AGTAAAATAC TTGTTACACA TCGTCATCTG
GCAGCACAGG AGCTTATCAA AGTCATCGTA AAAGATTTAC AAGGATTTTG CGAAAGCAAA
AATTTTAGGG ATGATGCCAC TATGGTGATT TTAAAAGTAA TGTAA
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| Protein sequence | MLIGEDTEMP VNKRKEEQNC DLLWALLNNA ADGIIVIDEE GRIILTNTAT EHFFGYRQQE
MIGQDMRKLI PDYDKCLTDH EKIISSEREV TGRRKDGNTF LAHLSISEIQ HGGQRLFAGV
IRDFTTHKQG EIDAQRLAAI VESSEDAIIS KTLDGIVISW NSAAQRIYGY SAEEICGQSI
SILAPPDRAD EIPQILQHIR RGERIKQFET VRMRKDGREM FVSLTISPIK NSQGSITGAA
TIARDITRRK QREEKLLWLS RALEQSPVAV TITDTAGNIQ YVNAKFTQLT GYHREEIIGR
NPRILQSGKT SLEEYQQLWS TIISGREWRG EIQDKKKNGE IYWILEQISP IKNTQGEITH
FLAIEEDISE RKQIEKALQE SEERFRQVAK MTGEWIWERD SSGRFIYCSG AVKEILGYEP
KEMFGKHYSE FFTLEAQEGK PCKSPQSGKR FFRIVCCYRH KDGREVFTES SGEPLLDERG
QIVKWRGLDR DITKRLEAQE LIRRAQISLA VTRNELRIAQ QIQESLLPTE SLVLPEVQVV
GHCLPASQVG GDYFDYYYRQ SDNTVDVTIA DVSGHSVGPA LFMVETRSAL KTQIRSKFTA
ANTLAALNDS LYEDLNGADH FITMFYMQYH IATGEINYAS AGHNPPLLLR RNEAVCNKLE
ADGLIFGVKK EVSFEEKRTF LKKGDLVFLY TDGIVEAESK QGEFFGIHRL SKILVTHRHL
AAQELIKVIV KDLQGFCESK NFRDDATMVI LKVM
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