Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2979 |
Symbol | |
ID | 3707458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 3369303 |
End bp | 3371567 |
Gene Length | 2265 bp |
Protein Length | 754 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637739453 |
Product | PAS sensor, serine phosphatase RsbU regulator of sigma subunit |
Protein accession | YP_344951 |
Protein GI | 77166426 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAATCG GCGAAGATAC TGAGATGCCA GTAAACAAAA GGAAGGAGGA ACAGAATTGC GATCTGCTTT GGGCTCTGCT CAATAATGCC GCCGATGGGA TCATTGTTAT TGATGAAGAA GGACGCATTA TTCTAACGAA TACAGCTACT GAACATTTTT TTGGTTACCG GCAGCAAGAA ATGATAGGCC AGGATATGCG CAAGCTCATA CCTGATTATG ATAAATGCCT TACAGATCAT GAGAAGATCA TTAGTTCTGA ACGCGAGGTC ACGGGCCGGC GTAAGGATGG CAACACTTTC CTTGCGCATC TATCGATTTC CGAGATTCAG CACGGGGGGC AGCGGCTTTT TGCTGGCGTT ATTCGCGACT TTACTACGCA CAAGCAGGGT GAAATAGATG CTCAAAGGCT GGCGGCCATC GTTGAATCAT CCGAAGACGC TATTATTAGC AAGACTCTCG ATGGCATTGT TATTAGCTGG AATTCCGCTG CCCAGCGAAT ATATGGTTAT AGCGCTGAGG AAATTTGTGG CCAATCTATT TCTATTCTTG CGCCCCCTGA TCGAGCTGAT GAGATACCCC AAATTCTCCA GCATATCCGG CGCGGCGAGC GCATTAAGCA GTTTGAGACG GTGCGCATGC GGAAGGATGG CAGAGAAATG TTCGTTTCTC TTACCATTTC TCCTATCAAA AACAGCCAGG GTTCTATCAC TGGGGCTGCA ACCATCGCTC GGGATATTAC CCGGCGTAAA CAAAGAGAAG AAAAATTGCT GTGGCTATCC CGAGCGCTAG AGCAAAGCCC CGTGGCGGTA ACTATTACAG ATACCGCAGG TAATATTCAG TATGTGAATG CTAAATTCAC TCAATTAACT GGTTACCACC GGGAAGAGAT TATTGGGAGA AATCCACGCA TCCTGCAATC AGGAAAGACT TCGCTGGAAG AATACCAACA ATTATGGAGC ACTATTATTT CTGGAAGAGA ATGGCGAGGG GAGATACAAG ACAAAAAAAA GAATGGGGAA ATCTATTGGA TATTGGAACA AATTTCACCT ATTAAGAACA CTCAAGGTGA AATTACCCAC TTTCTTGCTA TTGAGGAAGA TATTTCCGAG CGTAAACAAA TTGAAAAGGC CCTTCAAGAG AGTGAAGAAA GATTTCGTCA GGTTGCTAAG ATGACCGGCG AGTGGATATG GGAACGGGAT TCTTCCGGGC GTTTCATCTA TTGTAGTGGG GCAGTTAAGG AAATACTGGG CTATGAGCCC AAGGAAATGT TTGGCAAGCA TTACAGTGAG TTTTTTACCC TAGAAGCTCA GGAGGGCAAA CCTTGTAAAA GTCCGCAGAG TGGAAAGCGA TTTTTTCGGA TCGTTTGTTG CTATCGCCAC AAAGATGGCC GTGAAGTTTT TACGGAGTCT AGCGGCGAAC CCCTTCTGGA TGAACGAGGC CAAATCGTCA AGTGGCGGGG TCTTGATCGA GATATCACCA AACGGCTTGA AGCCCAAGAA TTGATCCGAC GGGCACAAAT AAGCCTTGCG GTAACACGCA ACGAGTTGAG GATCGCACAG CAAATCCAAG AATCTTTACT GCCTACGGAA TCTCTGGTGC TGCCTGAAGT CCAGGTTGTT GGTCATTGTC TCCCTGCCTC TCAGGTAGGA GGAGACTATT TTGATTATTA TTATCGCCAA TCTGATAATA CCGTGGATGT GACCATTGCC GATGTCTCTG GGCATTCTGT TGGTCCAGCC CTCTTTATGG TTGAAACCCG TAGCGCGCTG AAAACACAAA TCCGATCAAA ATTCACCGCC GCTAATACCC TTGCTGCTTT AAATGATTCA CTTTATGAGG ACTTAAATGG AGCTGATCAT TTCATTACCA TGTTTTATAT GCAGTACCAT ATTGCGACGG GAGAAATTAA TTATGCAAGC GCAGGCCATA ATCCCCCTTT GCTATTACGC CGTAACGAGG CAGTATGCAA TAAGTTAGAA GCGGATGGAT TAATTTTTGG AGTTAAAAAA GAAGTTAGCT TTGAAGAGAA GAGAACTTTT TTAAAAAAGG GAGATCTAGT ATTTCTCTAT ACGGATGGCA TCGTAGAAGC AGAGAGTAAA CAAGGTGAGT TTTTTGGTAT CCACCGTTTA AGTAAAATAC TTGTTACACA TCGTCATCTG GCAGCACAGG AGCTTATCAA AGTCATCGTA AAAGATTTAC AAGGATTTTG CGAAAGCAAA AATTTTAGGG ATGATGCCAC TATGGTGATT TTAAAAGTAA TGTAA
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Protein sequence | MLIGEDTEMP VNKRKEEQNC DLLWALLNNA ADGIIVIDEE GRIILTNTAT EHFFGYRQQE MIGQDMRKLI PDYDKCLTDH EKIISSEREV TGRRKDGNTF LAHLSISEIQ HGGQRLFAGV IRDFTTHKQG EIDAQRLAAI VESSEDAIIS KTLDGIVISW NSAAQRIYGY SAEEICGQSI SILAPPDRAD EIPQILQHIR RGERIKQFET VRMRKDGREM FVSLTISPIK NSQGSITGAA TIARDITRRK QREEKLLWLS RALEQSPVAV TITDTAGNIQ YVNAKFTQLT GYHREEIIGR NPRILQSGKT SLEEYQQLWS TIISGREWRG EIQDKKKNGE IYWILEQISP IKNTQGEITH FLAIEEDISE RKQIEKALQE SEERFRQVAK MTGEWIWERD SSGRFIYCSG AVKEILGYEP KEMFGKHYSE FFTLEAQEGK PCKSPQSGKR FFRIVCCYRH KDGREVFTES SGEPLLDERG QIVKWRGLDR DITKRLEAQE LIRRAQISLA VTRNELRIAQ QIQESLLPTE SLVLPEVQVV GHCLPASQVG GDYFDYYYRQ SDNTVDVTIA DVSGHSVGPA LFMVETRSAL KTQIRSKFTA ANTLAALNDS LYEDLNGADH FITMFYMQYH IATGEINYAS AGHNPPLLLR RNEAVCNKLE ADGLIFGVKK EVSFEEKRTF LKKGDLVFLY TDGIVEAESK QGEFFGIHRL SKILVTHRHL AAQELIKVIV KDLQGFCESK NFRDDATMVI LKVM
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