| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2909 |
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| Symbol | |
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| ID | 3707426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 3287993 |
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| End bp | 3291121 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637739386 |
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| Product | Type I site-specific deoxyribonuclease HsdR |
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| Protein accession | YP_344885 |
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| Protein GI | 77166360 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGGTCC TACCGGCAGG TTTTATATCC GTGCGTACAA CTACGGAAAA TTTCGGGAGA
AGATTAGGCG TGTTTCAGGA CGAACTCGAT AAAGTAGAAA CCCCCGCCAT TGCCCAGTTG
CAACGGCTAG GCTGGCGCTA TGTCCGTGGC GTTGAACTGT CACCGGAGGC TGCGGGCGCG
GAACGGGCCT ACTACCGGGA CGTGGTGTTG GTTGGCCGTC TGGAAGGGGC TATCCGGCGC
ATCAACCCTT GGCTCAGTGA GGAAAACCTG CGTAAGGTAG CGCGGGAAAT CACCCACCCC
AACCATGTGG GTTTGATGGA ATACAACCAT GCCATTTACC AGATGTTGGT CAATTACCTG
TCTATCGAAC AGGACTTGGG CAAGGGACGC AAGGGGCAGA CGGTCAAAAT TATTGATTTT
GAAAATCCCG GTAACAATGA ATTCTTGTGC GTTAACCAGT TCAAGGTTGA AGGACTCAAT
CAGAATATCA TTCCCGATAT CGTCTGCTTT GTGAATGGTT TGCCGTTGGC GGTGATTGAA
TGCAAATCCC CTTACGTGGC GGATGCCATT AGCGAAGGTA TTAAGCAACT TCGCCGCTAT
GCCAACCTTC GCTATCCGGA AACCGATGAA GGGGCGCAAA AGCTATTCTG GTACAACCAG
CTAATGATCA CCACCTGCCG GGATCAAGCC AAGGTGGGCA CCATCAGTTC CAGTGCCCAG
CATTACGGGG AATGGAAAGA CGCCTACCCC TTTACCGATG GGGACATCCG TGCACATCCC
TTCAGCCCCG GTGGCAAATA CGAGGTACGG GAAATGGCGC CACCGCTCTG GTATGCCGGT
GAGTTTGAAC AGGCCAGCCC CGTCACGCCC CAACAGCGCC TGCTGGCGGG TATGTTAGAT
CCCGGCAACT TTCTCGACCT GCTCCAAAAC TTCACCATCT TCGAAGCCGT TGAGGGTCGC
CTGGTCAAGA AGGTGGCCCG CTATCAGCAA TACCGCGCCA TGAACAAGGT CATCAAACGC
CTTAAAAGCG GCACGGATCG TAAGGAAAAG TCCGGGGTGG TGTGGCATAC CCAGGGGTCG
GGCAAGTCCC TGACCATGGT GATGCTGGCG GTGAAGATGC GCCGTGATCC GGCGTTACAG
CAATACAAGC TGGTGTTCGT CACCGACCGC ACCCAACTGG ATACCCAGTT GTCCAATACC
TTTCGCGGCG CCCAGAACGA AACGGTCTAC AACGCGGGCT CCGTGGCGGA GTTGAAAACC
CTGTTGAGCC GCGATTCGTC CGATATCGTC ACCGCCACGG TGCAGAAATT CCAGGACGCG
GAAGCGGCAG GCGGCTTCAA AGACCTGAAC CCCAGCGGCA AGATCATTGT GCTGGCGGAC
GAGGCCCACC GGACCCAGTT TGGCGGCTTG GCCATGACTA TCAATGCCGC CTTGCCCAAG
GCCCCCAAGA TTGGTTTTAC CGGCACACCG CTATTGAAGA CCCAAAAAAT GGATCAAGCC
TTCGGGGGCT ATATTGACCA GTACAAGATC AACGAAGCCG TGGAAGACGG CGCCACAGTG
CGCATCATCT ACGAAGGTCG ACAGGTGCAA AGCGATGTGG TGGGCGATTC ATTGGATGCC
CTGTTTGAAG CATACTTCCA AGGGTGCAGT GATGAAGAAA AACGGGCAAT CAAACAAAAA
TATGGGGTAG AATGGGCGGT ACGGGAGGCC CCGGCAAGGA TTCGCTGGGT CTGTATTGAT
CTGCTGAAGC ACTACCGTGA ACACATCCAG CCCAACGGTT TCAAGGCCAT GATTGTGGTG
GGCAGTCGCC ATGCCGCCAC GGTATTCAAG CAAACCCTGG ATGAGCTGGA CGCGCCGCCG
TCGGAGGTGA TTATTTCCGG CAAACACAAT GACCCGGCAA CCCTTGCCCA GTACACAGAC
CGGGTCCACC AGAAGCAGGC GATTCAAAAC TTTACTAAGC CCCTGGGGGA AGACCCCACC
GCCTTTCTCA TCGTCAAGGA CATGCTGCTC ACCGGCTTCG ATGCGCCGAT AGCGCAGGTC
ATGTACATGG ATCGCAGCCT GAAAGATCAC GCGCTGATGC AAGCCATTGC CCGGGTGAAC
CGTACCTGCA AGGGGAAGCA GGCGGGGTTT ATCGTAGATT ACCATGGCTT GTCTGATGAC
CTGACCGAAG CCCTCAACCA GTTCAGCAGC GAAGATGTGC AAGGCACCTA CCATACGCTG
AAGGACGAAA TACCCAAGCT GAAAGCTGCT CATACCCGTG TGGCCGCCAT CTTTGCCGGG
GTGAAAGGCG CGGATGTGGA TGATTATGTG CTGCGCCTGA AGGATGAAGA CACCCGCCAG
CAATTTGAAC GGGGCTTCAA ACGCTTCGCC AAGCAAATGG ACGTGATACT GCCGGATGTG
GCTGCCAAGC CCTATGTGCC AGACCTGAAG TTCTGGGGCA AGGTACAGAA CGCTGCTCGT
AACCGCTACC GCGACCCTGG TTTGAATATT CTCGACGCCG GTGAAAAGGT GCGCAAGCTG
GTGGAAGAGC ACATCATCAG CACCGGCGTA GACCCCAAGA TACCACCGGT TGATCTGATG
GCGGCAAATT TCAGGGAATC GGTAGAGCAG ATCAAGTCGC CGGAATCCCG TGCCTCTGAA
ATTGAAAGCG CCATCAAGCA CCATCTTATC GTTAACCTTG AGGAAGACCC CGAGTTCTAT
AAGTCGCTGA GCCTGCGTCT ACGGGAGATC ATCGAGAAAA CCAATGGCAA ATGGGAGCAG
CAATTGGAAT TGCTCCTTCA GATGGTCGAT AACATCGAAA CCGAACATAA GCAGGCAGCG
GATGAGGTTG GTCTCACCAA AACGGAATTC GCCTTCTATA ATATTCTCAT GGCTGAGGTC
ACTCGGCATG GTGGTGATGG ATTAGTCGGC GATGAAGTTC ATGAGGATAT CAAAGCAACC
AGCCAATTCC TGGTGAAGAC CTTTGATGAG GCAACCCAGA TCGTTGATTT CTTCCACAAG
CCCGATGAAG TGAAGCGGAT GAAAAAGGAA ATCAAGCGGG CGATACTGGA TTGTTCCTAC
GCGGATAAAG CGCTTGTGAC CGTTGTGCAA GAGCGCTTTA TGGACTTGGC TAAGCGAAAG
TTCGGATAA
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| Protein sequence | MVVLPAGFIS VRTTTENFGR RLGVFQDELD KVETPAIAQL QRLGWRYVRG VELSPEAAGA
ERAYYRDVVL VGRLEGAIRR INPWLSEENL RKVAREITHP NHVGLMEYNH AIYQMLVNYL
SIEQDLGKGR KGQTVKIIDF ENPGNNEFLC VNQFKVEGLN QNIIPDIVCF VNGLPLAVIE
CKSPYVADAI SEGIKQLRRY ANLRYPETDE GAQKLFWYNQ LMITTCRDQA KVGTISSSAQ
HYGEWKDAYP FTDGDIRAHP FSPGGKYEVR EMAPPLWYAG EFEQASPVTP QQRLLAGMLD
PGNFLDLLQN FTIFEAVEGR LVKKVARYQQ YRAMNKVIKR LKSGTDRKEK SGVVWHTQGS
GKSLTMVMLA VKMRRDPALQ QYKLVFVTDR TQLDTQLSNT FRGAQNETVY NAGSVAELKT
LLSRDSSDIV TATVQKFQDA EAAGGFKDLN PSGKIIVLAD EAHRTQFGGL AMTINAALPK
APKIGFTGTP LLKTQKMDQA FGGYIDQYKI NEAVEDGATV RIIYEGRQVQ SDVVGDSLDA
LFEAYFQGCS DEEKRAIKQK YGVEWAVREA PARIRWVCID LLKHYREHIQ PNGFKAMIVV
GSRHAATVFK QTLDELDAPP SEVIISGKHN DPATLAQYTD RVHQKQAIQN FTKPLGEDPT
AFLIVKDMLL TGFDAPIAQV MYMDRSLKDH ALMQAIARVN RTCKGKQAGF IVDYHGLSDD
LTEALNQFSS EDVQGTYHTL KDEIPKLKAA HTRVAAIFAG VKGADVDDYV LRLKDEDTRQ
QFERGFKRFA KQMDVILPDV AAKPYVPDLK FWGKVQNAAR NRYRDPGLNI LDAGEKVRKL
VEEHIISTGV DPKIPPVDLM AANFRESVEQ IKSPESRASE IESAIKHHLI VNLEEDPEFY
KSLSLRLREI IEKTNGKWEQ QLELLLQMVD NIETEHKQAA DEVGLTKTEF AFYNILMAEV
TRHGGDGLVG DEVHEDIKAT SQFLVKTFDE ATQIVDFFHK PDEVKRMKKE IKRAILDCSY
ADKALVTVVQ ERFMDLAKRK FG
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