| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2897 |
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| Symbol | |
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| ID | 3707451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 3275464 |
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| End bp | 3277632 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637739373 |
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| Product | ribonuclease R |
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| Protein accession | YP_344873 |
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| Protein GI | 77166348 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATT GGAAAAAAAA GGACCCCTAC TTTGCCCGTG AAACCCAGAA ATACGGGCAA
CCTATCCCCA GCCGGGAATA TATCATGCAA TGTTTAGAAC GGCGGGGTAG ACCCATGACT
CGCAAGGAGC TGATAAAAAC CTTAAAGCTT GATAGCGGCG AGGAGGTGCG GGAGGCTTTC
CGCCGCCGCC TGCGGGCCAT GGAGCGGGAT GGCCAACTCA TGCGCAACCG CCGCCGCGCC
TATGGCTTGG TCCACAAAAT GGATCTGGTG CGGGGGCGGA TCATCGGTCA CAAGGATGGT
TTCGGTTTTC TGGTGCCCGA TGAGGGGGGA GAGGATCTTT ATCTTTCCGC GCGACAAATG
CGTGCTGTCC TGCACGGGGA TAGGGCAGTC GCCCAGGTTA CCGGGATTGA CCGACGCGGG
CGCCGCGAAG GGGCCGTGAT TGAAGTGTTA GAGCGGAATA ACCACCGGGT TGTGGGCCGC
TTTGTCGCCG AGGATACATT GGGTTTCTTG GTGCCCAGCA ACCAGCGCCT CAGCCAGGAT
ATTCTAATTC CGCTGGAGCA TCAGGAAGGT GCCCAGGACA ATCAAATTGT CGTTGCCGAG
ATCACGGAGC AGCCTACCGC CAAGCGCCAG CCCATTGGCA GAATCGTGGA GTTGCTCGGC
GATCACATGG CGCCAGGGAT GGAGATGGAT ATTGCGCTTC AAATCCATGA ACTACCCCAT
GTTTGGCCGG AAGAAGTGCT GACCGAGGCT AAGGTTTTCA AAACCACGGT GCCTAGAAAA
GCAAAAGCGG GACGGCTGGA TTTGCGGGAT CTGCCTCTGG TGACCATTGA TGGGGAAGAT
GCCCAGGATT TTGATGATGC GGTTTATGCG GAGCGCCACG ACCAGGGTTG GCGCTTGTGG
GTGGCGATTG CGGATGTCTC CTGGTATGTA CAGCCTTATT CCGCCCTGGA TAGCGAGGCC
GAAAAACGGG GCAACTCGGT GTATTTCCCC AGCCGGGTAA TTCCCATGCT GCCGGAAGCG
CTGTCTAATG GCTTGTGTTC CCTCAATCCG AAGGTGGATC GGCTGTGTTT GGTCTGTGAA
ATGGTGATCG GCCCGCGGGG GGGATTAAAT AGCTTTCGTT TTCATTCCGG GGTAATGCGG
TCAGCAGCCC GGTTGACTTA CCATCAGGCC GCGGCCCTCC TTGAGGGTAG TGATCGCAAG
CTGCAAGAGC GTTATAAGAC GGTGCTTCCA GGGCTTGAGG CAATGCATAG CCTTTATCAG
GTGTTACATA AAGCCCGCGC CCGGCGGGGC GCTATTGATT TTGAAATGGG CGAGACCCAA
ATCATTTTCG ATGAGGCTCA AAAGATTAAG GACATTCAGC CCTTGGTGCG TAATGACGCC
CATCGTCTGA TTGAAGAGTT CATGATCCTG GCCAATGTGG CTGCGGCCCG GTTCCTGACT
CAACATAAAG TGCCCACCCT TTATCGCGTT CACGAGCGAC CAGCGGACGA TAAATTGGTT
GATTTACACA AGTTCCTGGC CGAATTAGGA TTGGCTTTGC AGGGGGGTGA GTCTCCTGGA
GCCAAGGATT TTGCCCGCTT TTTACGCTCT GTTCAGGAGC GCCCGGATGC CCACCTCATC
CAGACAGTGA TATTGCGCAC CTTTAAGCAG GCGGTTTACA GTCCCGACAA CCATGGGCAT
TTCGGGCTAT CTCTGCCCGT CTATACTCAC TTTACTTCTC CCATACGGCG TTACCCTGAT
TTGCTGGTGC ATCGTGCTAT TCGCCATGTG CTAGAACAGC GATCCGCAAA AACGTTCCTG
TACACCCAGG ATGAAATGAT GGCCCTGGGG GAGCATTGCT CCATGACCGA GCGCCGCGCC
GATGAGGCCA CCCGTGATGC CGAAGACTGG CTCAAATGCG AATATATGAA GGATAGGGTA
GGCGAGTCCT TTGACGGCCT AATCACCGGG GTCACCTCTT TTGGCCTCTT CGTGGAACTC
AGCGATATTT ATGTGGAAGG GTTGGTCCAC GTTACGGCTC TGGGCAACGA TTATTTCCAT
TTTGACCCTG CGGGTCGCCG TCTTCTGGGG GAGCACACGC GCCAGGTTTA CCGTTTGGCC
GATAAAGTCC GGGTCATGGT CGTCCGGGTC GATCTGGATG AGAAGAAAAT CGATCTGGAA
TTGGCTTGA
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| Protein sequence | MSDWKKKDPY FARETQKYGQ PIPSREYIMQ CLERRGRPMT RKELIKTLKL DSGEEVREAF
RRRLRAMERD GQLMRNRRRA YGLVHKMDLV RGRIIGHKDG FGFLVPDEGG EDLYLSARQM
RAVLHGDRAV AQVTGIDRRG RREGAVIEVL ERNNHRVVGR FVAEDTLGFL VPSNQRLSQD
ILIPLEHQEG AQDNQIVVAE ITEQPTAKRQ PIGRIVELLG DHMAPGMEMD IALQIHELPH
VWPEEVLTEA KVFKTTVPRK AKAGRLDLRD LPLVTIDGED AQDFDDAVYA ERHDQGWRLW
VAIADVSWYV QPYSALDSEA EKRGNSVYFP SRVIPMLPEA LSNGLCSLNP KVDRLCLVCE
MVIGPRGGLN SFRFHSGVMR SAARLTYHQA AALLEGSDRK LQERYKTVLP GLEAMHSLYQ
VLHKARARRG AIDFEMGETQ IIFDEAQKIK DIQPLVRNDA HRLIEEFMIL ANVAAARFLT
QHKVPTLYRV HERPADDKLV DLHKFLAELG LALQGGESPG AKDFARFLRS VQERPDAHLI
QTVILRTFKQ AVYSPDNHGH FGLSLPVYTH FTSPIRRYPD LLVHRAIRHV LEQRSAKTFL
YTQDEMMALG EHCSMTERRA DEATRDAEDW LKCEYMKDRV GESFDGLITG VTSFGLFVEL
SDIYVEGLVH VTALGNDYFH FDPAGRRLLG EHTRQVYRLA DKVRVMVVRV DLDEKKIDLE
LA
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