| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2895 |
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| Symbol | |
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| ID | 3707449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 3272426 |
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| End bp | 3274168 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637739371 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_344871 |
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| Protein GI | 77166346 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.847539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGCAAC AACTTGGCAA AACTATTCCT ATTACGCCTG CTCCTGAAGA GGAGGCGGTT
CCCCAAAGCC TGGAGGAAAA GCTTGGCGAG TATTTGATTG AGCGGCGCAA GCTGCGGGCA
GGTGAATTCC GCCATGCCTG GCGTTTGGCG GAGGAGGAAG GGCTGCGGCT TTCCGTTATG
CTCATAAGGC TGGGGTTGAT CTCGGAGCGG GATATGGCGG AAGCCTTTTC CGCCTTGCTC
GATCTGCCGC TGCTAGCAAC GAACGATTAT GATAATAGCG ATCTGAACGG TCAAGTTTCA
TTGCGGTTCC TCAAAGAATT CCGGGCCATT CCCGTGCTGG AGGAAGAGGA GGCAGTGGTG
CTGGCGATGG CCGACCCTAG TGATGATTAT GTCCAGGAAG CCATTGCCCT GGCTTACAGC
AAGCCCATCA GTCTGCGGGT CGGTTTGCCT TCGGATATTG AAGCGGCCCT TGATCGTCAG
GCCGGGGGAA AATCGGCCAT GGGACAGATC GTCGAACATC TGGGGGCGGA CGAAGATGGG
GAAACCGATG TCCAGCACCT GAAGGATATG GCCAGCGAGG CCCCGGTCGT CCGCCTGGTG
AATTTGTTGA TTCAGCGTGC GGTGGAATCC CGAGCTTCGG ATATCCATAT CGAGCCTTTT
GAAAACAGTC TTCGGGTCCG CTACCGGATC GATGGCGTGT TGCGGGATGT AGAGGCCCCC
CCGGCGCGTT CCACCGCTGC TGTGATTTCC CGCTTCAAGA TTATGGCTAA GCTTAATATC
GCTGAGCGGC GATTACCCCA GGATGGGCGA ATCCAGCTTC GTATCCAAGG GCGGGAGCTG
GACTTGCGGG TCTCGACAGT GCCGACTCTG TATGGCGAGA GCGTGGTGCT TCGGCTGCTA
GATAAAGGCA ATGTGGTGCT GGATTTCGAC TCCCTGGGCT TCCAGGGAAG TACCTTGGAG
CGTTTTTTGC ATGTATTGGA ACAGCCCCAT GGAATTATTG TCGTCACGGG TCCCACAGGT
AGTGGTAAAA GCACCACCCT TTATACCGCG TTGCATAAAC TCAATACTCC AGACCGAAAA
ATTGTAACGG TGGAAGATCC GGTGGAGTAT CAGCTTGAAG GGATCAACCA AATCCAGGTT
AAACCGCAGA TTGGCCTTAC TTTTGCGGGT GCTTTGCGGT CTATCGTGCG CCAAGATCCG
GATGTCATCA TGATTGGTGA AATGCGGGAT AAGGAGACTG CTGGCATCGC GGTTCAATCG
GCCCTGACGG GTCATGTGGT GCTCTCCACT CTCCATACCA ATGATGCGGC TGGAGGGGTT
ACCCGCTTAT TGGATATGGG AATAGAGGAT TATCTGCTGA CCTCCACTGT CAATGGTATT
TTGGCCCAAC GCTTGGTACG CACTCTCTGT AAACATTGCA GTGAACCTTA CGAGGCCCTG
CCTGAACTTA TAGAGGAGCT GGAATTGCAT CGCTTCAGCC AGGAGAAACC CGTGATGTTG
CATCGGGCCG TTGGCTGCGA GCAATGTAAC GGGATTGGTT ATCATGGGCG GGCGGCGATC
ATGGAATTTC TGGTGATGAG CGATCCTATC CGCCGTCTTG TGCTCCAGCA TACCGATGCG
GGGGAGATTC AAAAGCAAGC TCAGAAAGAA GGCATGCGTA TTATGTATGA AGATGGTCTT
CATAAAGCAC TCTCTGGCTT CACTACTATT GAAGAGGTGA TCCGAGTCAG CCAGGAATCG
TGA
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| Protein sequence | MAQQLGKTIP ITPAPEEEAV PQSLEEKLGE YLIERRKLRA GEFRHAWRLA EEEGLRLSVM
LIRLGLISER DMAEAFSALL DLPLLATNDY DNSDLNGQVS LRFLKEFRAI PVLEEEEAVV
LAMADPSDDY VQEAIALAYS KPISLRVGLP SDIEAALDRQ AGGKSAMGQI VEHLGADEDG
ETDVQHLKDM ASEAPVVRLV NLLIQRAVES RASDIHIEPF ENSLRVRYRI DGVLRDVEAP
PARSTAAVIS RFKIMAKLNI AERRLPQDGR IQLRIQGREL DLRVSTVPTL YGESVVLRLL
DKGNVVLDFD SLGFQGSTLE RFLHVLEQPH GIIVVTGPTG SGKSTTLYTA LHKLNTPDRK
IVTVEDPVEY QLEGINQIQV KPQIGLTFAG ALRSIVRQDP DVIMIGEMRD KETAGIAVQS
ALTGHVVLST LHTNDAAGGV TRLLDMGIED YLLTSTVNGI LAQRLVRTLC KHCSEPYEAL
PELIEELELH RFSQEKPVML HRAVGCEQCN GIGYHGRAAI MEFLVMSDPI RRLVLQHTDA
GEIQKQAQKE GMRIMYEDGL HKALSGFTTI EEVIRVSQES
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