| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2858 |
|---|
| Symbol | |
|---|
| ID | 3705399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 3236686 |
|---|
| End bp | 3237636 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637739334 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_344834 |
|---|
| Protein GI | 77166309 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000136858 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGGGA GGGTGGATGT CAAAGCCTGG GGCAAGGTTG TGGTGTTGAT GGGTGGCTAT
TCTGCGGAGC GAGAGATTTC TCTTAAAAGC GGTACCGCCG TCCTTCAATC TCTCCTAAGG
CAGGGAATTG AAGCCCATGG AATTGATGTG GATAAAGGAG TGTTAACGCA GCTTTCAAAA
GGGCAGTTTA CCCGGGCCTT TATAGCTCTG CACGGACGCG GGGGAGAGGA TGGTGTTATT
CAGGGAGTTT TGGAAACTTT AAACTTGCCC TATACCGGCA GTGGGGTATT GGGGTCTGCC
CTGACCATGG ATAAGCTGCG TAGTAAGCGG CTTTGGCGGG GAATGGATTT GCCTACCGCA
GATTTTTCTG TGCTCACCAG GGATACAAAT CCAGCTTTAA TTGCGGCTGA CCTAGGTTTA
CCCCTTATTG TGAAACCGGC GCGGGAAGGT TCAAGCTTGG GGATGATGAA AGTAGAAAGC
ATTGAGGCGT TGCAATCTGC TTATAGAGAA GCGGTGATTT TTGATACAGC GGTATTTGCC
GAGCGGTGGC TACCAGGGGC GGAGTATACC GCTGCTATTC TTGCGGACCG AGTCTTGCCG
CTCATTCGTT TGGAGACGCC CCGCGTTTTC TACGATTTCG AAGCGAAATA TCATGCTAAT
ACAACCCGTT ATTTCTGCCC CTGTGGGCTC TCGGAGAAGC AAGAGCAAGA CTTGCAGGCA
CTAGCTTTAG AAGCGTTTCA GGCCCTTGGG GCTAGCGGCT GGGGACGAGT GGATTTGCGC
TGCGATGAGA AAGCACATCC CTATTTGCTT GAGATCAATA CGGTGCCGGG TATGACGGAT
CATAGCTTAG TGCCGATGGC GGCCCAGGCT GCGGGTATTG AGTTCGATGA GATGGTTTTG
CAGATATTGG CAAGTAGTTT GGAGCGGAGA ATGTTCCAGG ATGGCACGTA G
|
|---|
| Protein sequence | MIGRVDVKAW GKVVVLMGGY SAEREISLKS GTAVLQSLLR QGIEAHGIDV DKGVLTQLSK
GQFTRAFIAL HGRGGEDGVI QGVLETLNLP YTGSGVLGSA LTMDKLRSKR LWRGMDLPTA
DFSVLTRDTN PALIAADLGL PLIVKPAREG SSLGMMKVES IEALQSAYRE AVIFDTAVFA
ERWLPGAEYT AAILADRVLP LIRLETPRVF YDFEAKYHAN TTRYFCPCGL SEKQEQDLQA
LALEAFQALG ASGWGRVDLR CDEKAHPYLL EINTVPGMTD HSLVPMAAQA AGIEFDEMVL
QILASSLERR MFQDGT
|
|---|
| |