Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2844 |
Symbol | |
ID | 3705536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | + |
Start bp | 3221119 |
End bp | 3222093 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637739320 |
Product | pseudouridine synthase, RluD |
Protein accession | YP_344820 |
Protein GI | 77166295 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.546073 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACTG CGAAAAAACC ACCAGCGGCC CAAGTCCGCA TCCTGAAAAT ACATCTAGAG CAGGCAGGCC AACGGATCGA CAATTTTTTG TTTTCCCAGC TCAAAGGAGT TCCCAAGAGT AGGATTTACC GTTGCCTCCG CAAGGGAGAG GTCCGAGTTA ATAAATCCCG CATCGCTAGT AGCTACCGCC TACAACAAGG AGACCAGGTC AGGGTTCCGC CACTGCGCGT ATCTCATTCC CCCCTTAAGA GACCGATAGC TCACTCCCTC TTGCTCCTAA TTAAGAACAG CTTATTGTAT GAGGATAAGG AGCTACTCAT GCTCAACAAA CCGGCCAGAA TCCCGGTCCA CGGGGGGAGT GGGGTAAGTT ATGGAATTAT TGAGGCGCTG CGGATTTTGC GCCCAGAGGC CGCCTTTTTG GAGCTAGTAC ACCGTTTAGA CCGAGAAACT TCCGGTTGCC TTATGGTAGC CAAAACCAGA AGCGCCTTAC TGACGCTCCA AGCAATGCAG CAAAAACAAC TTATCCACAA ACGCTATCTT GCCCTCGTCA AAGGGCGTTG GCGAAAAAAT GTCCAGCGGG TAGACTTGCC CCTACTAAAA AATATATTAC GTTCTGAAGA ACGGATAGTT AAGGTGAATT CAGCTGGCAA GCCCGCTATT AGTCACTTCT ACCCCAAACT TTTTTATGGA GGTGAAGCAA CCCTTATGGA GGTTACCTTA GAAACCGGTC GCACACATCA GATACGGGTA CACGCCGCTC ACCTTGGACA CCCTCTCGGT GGCGATGAAA AATATGGTGA TTCCAGCTTC AATAAGCAAT TACGATGTAT GGGATTACAT CGACTATTTC TCCATGCTAG CCAGCTCACC TTTACTCTGC CGGAAGGGAA AAAGACAATA AAAGCCGCCG CCCCTCTGCC CAAGGAATTA AATGCTGTGC TGCAAACATA CGCTGCCAAG CTCAGAGCTA AATAA
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Protein sequence | MNTAKKPPAA QVRILKIHLE QAGQRIDNFL FSQLKGVPKS RIYRCLRKGE VRVNKSRIAS SYRLQQGDQV RVPPLRVSHS PLKRPIAHSL LLLIKNSLLY EDKELLMLNK PARIPVHGGS GVSYGIIEAL RILRPEAAFL ELVHRLDRET SGCLMVAKTR SALLTLQAMQ QKQLIHKRYL ALVKGRWRKN VQRVDLPLLK NILRSEERIV KVNSAGKPAI SHFYPKLFYG GEATLMEVTL ETGRTHQIRV HAAHLGHPLG GDEKYGDSSF NKQLRCMGLH RLFLHASQLT FTLPEGKKTI KAAAPLPKEL NAVLQTYAAK LRAK
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