Gene Noc_2828 details

Gene Information

• Locus tag: Noc_2828
• ID: 3705577
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: +
• Start bp: 3204298
• End bp: 3206172
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637739304
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_344805
• Protein GI: 77166280
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.177049
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGCCA TTCCGGAAGA ATTTCTGTCC ACCCAAGCCC AGGTGGATGA GCAAGCCATC 
CAACCCTTTC CCAATTCACG CAAAATCCAT GTCGCGGGTA GTCGTCCCGA CATTCGTGTC 
CCCATGCGAG AAATCACGCT TTCCGACACC CATACGAGTC AGGGGCGAGA GAAAAACCCC 
CCCTTAACTG TCTATGATAC CTCGGGTCCT TATACGGACC CGGAAGCCAA AATTGATATC 
CGCCAAGGCC TGTCGGAACT CCGTCGAAAC TGGATTGAAG AACGGGCAGA TACCGAAATA 
TTATCTGATC TTTCCTCCCA ATACGGCCGT CAGAGAAACG CTGACTCCAA GCTGGATTCC 
TTACGTTTTG CCCATCTACG CCCACCCCGC CGAGCCAAAG CTGGGCATAA TGTGAGCCAG 
ATGCACTACG CTCGACAAGG AATCATCACC CCAGAAATGG AATTTATTGC TATCCGCGAA 
AACCAGCGCT TGGAGCAATA CCGGGAGCAG CTTGCCCAGC ACCATCCCGG CCAGTCATTC 
GGTGCCCATC TACCGTCCCG GCTAACCCCC GAATTCGTAC GCTCGGAAGT CGCTCGCGGC 
CGCGCCATTA TCCCAGCCAA TATCAACCAT ACCGAGTTGG AGCCCATGAT CATCGGGCGT 
AACTTCTTGG TCAAGATTAA TGCCAATATT GGCAACTCCG CCGTAACCTC TAGCATTGCC 
GAGGAAGTGG ATAAAATGAC CTGGGCCATC CGTTGGGGTG CCGACACGGT GATGGATCTT 
TCCACTGGCA AAAATATCCA CGAAACACGG GAATGGATAG TACGCAACTC TCCCGTCCCC 
ATTGGCACCG TGCCCATTTA CCAGGCCCTC GAAAAAGTGG GGGGAAAAGC CGAAGAGCTG 
ACCTGGGAGA TCTTCCGCGA CACCTTAATT GAACAAGCCG AACAGGGCGT GGATTATTTC 
ACCATTCACG CCGGGGTGCG CCTGGCCTAT GTGCCTTTAA CCGCTAAGCG GCTAACCGGT 
ATCGTCTCCC GGGGCGGCTC TATCATGGCC AAATGGTGTC TTGCCCATCA CACGGAAAGT 
TTCCTCTACA CTCATTTTGA GGAAATTTGC GAAATTATGA AAGCTTACGA TGTTTCTTTC 
TCCTTAGGAG ATGGCCTGCG GCCTGGCTCT CTTGCCGATG CCAACGATGC AGCTCAATTT 
GCCGAGCTTG AAACCCTGGG AGAACTTACC GAAATCGCTT GGAAACATGA TGTCCAAACC 
ATGATCGAAG GCCCAGGCCA TGTCCCCATG CATCTTATTA AGGAAAATAT GGACAAACAG 
TTGGCTTGTT GTGGCGAGGC GCCTTTCTAC ACCTTGGGAC CTTTAACCAC CGACATTGCG 
CCAGGCTACG ACCACATCAC CTCTGGCATC GGCGCGGCTA TGATTGGCTG GTATGGCACT 
GCCATGCTCT GTTACGTCAC CCCCAAGGAG CACCTAGGAT TACCCAATAA AAATGATGTC 
AAGGAAGGCA TTATTACTTA TAAAATCGCG GCCCACGCAG CTGACCTAGC CAAAGGCCAC 
CCCAGCGCCC AAATCAGAGA TAATGCCATG TCCAAAGCAA GATTTGAGTT TCGCTGGGAA 
GATCAGTTCA ACATTGGTTT AGATCCTGAT CAGGCACGGG AGTATCACGA TGAGACCTTG 
CCCAAAGACT CAGCCAAAGT AGCCCACTTC TGTTCCATGT GCGGTCCTCA ATTTTGCTCC 
ATGAAGATCT CCCAGGACGT GCGCGAATAT GCTAAACAGA AGGGTCTAAA GCACCATACC 
GCTCTGGAAC AAGGTATGGC GGAAAAAGCC CAGGAATTTA GGGAAAAGGG TGCGGAGATT 
TACCACGAGA CCTGA 

 

Protein sequence

MSAIPEEFLS TQAQVDEQAI QPFPNSRKIH VAGSRPDIRV PMREITLSDT HTSQGREKNP 
PLTVYDTSGP YTDPEAKIDI RQGLSELRRN WIEERADTEI LSDLSSQYGR QRNADSKLDS 
LRFAHLRPPR RAKAGHNVSQ MHYARQGIIT PEMEFIAIRE NQRLEQYREQ LAQHHPGQSF 
GAHLPSRLTP EFVRSEVARG RAIIPANINH TELEPMIIGR NFLVKINANI GNSAVTSSIA 
EEVDKMTWAI RWGADTVMDL STGKNIHETR EWIVRNSPVP IGTVPIYQAL EKVGGKAEEL 
TWEIFRDTLI EQAEQGVDYF TIHAGVRLAY VPLTAKRLTG IVSRGGSIMA KWCLAHHTES 
FLYTHFEEIC EIMKAYDVSF SLGDGLRPGS LADANDAAQF AELETLGELT EIAWKHDVQT 
MIEGPGHVPM HLIKENMDKQ LACCGEAPFY TLGPLTTDIA PGYDHITSGI GAAMIGWYGT 
AMLCYVTPKE HLGLPNKNDV KEGIITYKIA AHAADLAKGH PSAQIRDNAM SKARFEFRWE 
DQFNIGLDPD QAREYHDETL PKDSAKVAHF CSMCGPQFCS MKISQDVREY AKQKGLKHHT 
ALEQGMAEKA QEFREKGAEI YHET