Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2808 |
Symbol | |
ID | 3705288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 3182378 |
End bp | 3184375 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637739284 |
Product | transketolase |
Protein accession | YP_344785 |
Protein GI | 77166260 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000368556 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTTCTC GCAGAGAACT GGCTAATGCT ATCCGTGCGC TTAGTATGGA CGCAGTGCAA AAGGCGAAAT CTGGCCACCC TGGGGCACCT ATGGGGATGG CAGATATCGC TGAAGTATTA TGGAATGATT TTCTCACGCA TAATCCTAAC AATCCCCACT GGGTGGACCG GGATCGATTC GTGCTTTCCA ATGGGCATGG CTCCATGCTG CTCTATTCCT TACTCCACTT GAGCGGTTAT GGCGTGAGCA TGGAGGATCT CAAGCAGTTC CGCCAGCTTC ATTCCAAGAC ACCAGGCCAT CCAGAATATG GATATGCCCC TGGTATTGAG ACAACCACCG GGCCATTGGG TCAAGGTCTT AGTAATGCTG TCGGCATGGC CCTGGCTGAG AAAGTATTGG CGGGCCAGTT CAACCGAGAT GGTCATGAAA TCGTTGATCA TTATACCTAT GTATTCCTCG GAGATGGCTG CTTGATGGAA GGGATTTCCC ATGAATCCTG CGCCTTGGCG GGTACTTGGG GATTAGGGAA GCTGGTTGCT TTCTATGACG ACAATGGTAT TTCCATTGAT GGAGATGTGG CGGGATGGTT TACCGACGAT ACGCCGAAGC GTTTCGAGGC TTATGATTGG CACGTTATAC GGGATGTGGA TGGACACGAC TCAGAGGCTG TGCGCCAAGC CACTGAAGAG GCGCGCTCAG TCATCGATAA ACCTACCCTC ATTTGCTGTA AGACATTGAT TGGCTATGGT GCTCCTAATT TAGCGGGAAG CCATGATTGT CATGGGGCAC CGCTTGGAGA AGATGAGATT GTGGCTACCC GTGACAAATT AGGTTGGCCT CACCCCCCTT TTGCAATTCC AGAGGAAATT TATGAGGGTT GGAATGGGGC TGAAAAAGGC AAGGCGGCGG AGGCAGCTTG GGATGAAAAG TTTGCTGCCT ATAAAGCTAC TTATCCAGAA TTGGCAGCGG AATTTAAGCG TCGTCTCCAG CGTAAACTTC CTGAAAATTG GGAAACGACC GCCGCTGAAG TTATTCAGGC GGCTGCTGTC AAGGCCGAAA AAATTGCTAC TCGCAAGGCA TCTCAAAATG CTCTCGAAGC TTACGCGCCA GTCTTGCCAG AGCTATTGGG AGGATCGGCG GACTTGACCG GCTCTAACCT TACCCATTGG TCAGGTTCAA AAGTGCTCGG TAAAGCTGCC CCTGAAGGTA ATTACATCCA CTATGGTGTG CGGGAGTTTG GGATGTCGGC CATTATGAAT GGAATTGCCC TGCATGGCGG CTTTATTCCC TATGGCGGGA CCTTTCTAAT GTTCTCCGAA TATGCCCGTA ACGCGGTGCG GATGGCTGCG CTCATGGGGG TGCAAAGTAT TTTTGTCTAT ACCCATGATT CTATCGGATT AGGTGAAGAT GGGCCTACTC ACCAAGCGGT AGAGCAAGCG GCGACCTTGC GCTATATTCC CCGTATGTCA GTATGGCGCC CCTGTGATGC GGTAGAAAGC CTGGTTGCTT GGAGAGCGGC TATTGAGCGT CAAGAGGGGC CAACGTCCTT GCTATTTTCC CGCCAGGGGT TGCCTCCCCA GGAGCGAACT CCTGAGCAAA TTGAAAATAT CCGCCGCGGT GGCTATATCC TGCGCGATAC GGAGGGTAAG CCCGATGTCA TTATAGTGGC TACCGGTTCC GAAGTGGCGC TGGCGATGGA AGCGGCTGAA ACTTTGGGAA GCAAGGGTGT CCAGGCGCGG GTAGTTTCTA TGCCTTGCAC GGATGTCTTC GATGCTCAGA GTAAAGCCTA CCGGGAAGCG ATTCTGCCCC CTGAAGTGCG GGCTCGCGTG GCGGTGGAAG CGGGAATCAC CGATTACTGG CGGAAGTATG TGGGGCTTGA GGGTAAAGTA TTAGGCATTG ATACCTTTGG AGAATCAGCT CCAGCTGAGG ATGTATTCCG GCATTTTGGC CTGACTGCGG AGAATTTGGC TAAGATCGCC GAAGATATGG TTTCTTAA
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Protein sequence | MPSRRELANA IRALSMDAVQ KAKSGHPGAP MGMADIAEVL WNDFLTHNPN NPHWVDRDRF VLSNGHGSML LYSLLHLSGY GVSMEDLKQF RQLHSKTPGH PEYGYAPGIE TTTGPLGQGL SNAVGMALAE KVLAGQFNRD GHEIVDHYTY VFLGDGCLME GISHESCALA GTWGLGKLVA FYDDNGISID GDVAGWFTDD TPKRFEAYDW HVIRDVDGHD SEAVRQATEE ARSVIDKPTL ICCKTLIGYG APNLAGSHDC HGAPLGEDEI VATRDKLGWP HPPFAIPEEI YEGWNGAEKG KAAEAAWDEK FAAYKATYPE LAAEFKRRLQ RKLPENWETT AAEVIQAAAV KAEKIATRKA SQNALEAYAP VLPELLGGSA DLTGSNLTHW SGSKVLGKAA PEGNYIHYGV REFGMSAIMN GIALHGGFIP YGGTFLMFSE YARNAVRMAA LMGVQSIFVY THDSIGLGED GPTHQAVEQA ATLRYIPRMS VWRPCDAVES LVAWRAAIER QEGPTSLLFS RQGLPPQERT PEQIENIRRG GYILRDTEGK PDVIIVATGS EVALAMEAAE TLGSKGVQAR VVSMPCTDVF DAQSKAYREA ILPPEVRARV AVEAGITDYW RKYVGLEGKV LGIDTFGESA PAEDVFRHFG LTAENLAKIA EDMVS
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