Gene Noc_2793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2793 
Symbol 
ID3705273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp3166839 
End bp3168287 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content46% 
IMG OID637739269 
Productsigma-54, RpoN 
Protein accessionYP_344770 
Protein GI77166245 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.127883 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAT CTCTTCAGTT ACGCCTTGGG CAACAACTGA CGATGACGCC CCAGTTGCAG 
CAAGCTATTC GTCTGTTGCA ACTTTCAACC TTGGAACTAC AAACCGAGAT CCAGCAGGCA
TTAGAGTCTA ATCCTCTGCT TGAGCAGAAC GAAGAGGGGC AGGAGCCTTT AGAAGCCGAT
GGCTTAAAGA ACGAAGCCCT TGATTCTGAA GGCAGTGAGT TAACTACTTC ACTGGCGCAA
GAGACAATCC CAGAGGAATT ACCGGTAGAC ACGAGCTGGA ACGATATCTA TGACAGTTTA
CCGTTGCCGG CTGCCTCTGG AAACGAATCT TCACCTGATC TAGAAAACCA AGACAAGGGG
GGAGAAACCC TGCAAGAGCA CTTGCTATGG CAGGCGCATT TGGCTATCAC CAACGAGAAA
GATTTTGTCA TTGCGGCCAC TATCATCGAT TCGATTAATG AAGAAGGCTA TCTATGCAGT
ACCTTTGAAG AAATACAAGA AAGTCTAGGA AAGGACATAG AGGTAGAACT TGATGAGATC
GAAGTCATAT TACACCAGAT ACAAAACTTC GAGCCTTCTG GAGTTGGCGC ACGTGACTTA
GCTGAGTGTC TGTTGTTACA ACTGAAACAA TATCCTCCCA CCACCCCTTG GCTAAAAGAA
GCCAAGCTGC TCCTGTCCCA ACATCTCATA ACTCTGGGAA AACGGGACTA TATGCAATTG
ATGCGGGTGA TGAAACTATT AGAACAAGAA CTACAAGCCG TTATCCATTT AATCCAATCG
CTCAATCCAC GGCCAGGCCA TCAAATACAG CCGAGTAAAA CCGAATACGT TGTGCCTGAT
ATCTATGTCA CTAAACACAA AGGCTGTTGG CAAGTCGAAC TTAACCCCGA TACCGCCCCA
CGCTTACGGG TCAATAGCCA GTATGCTAGT CTTATCAAAC GAGCCGACGA TAGTCTCGCT
AATAGTTATC TCAAAAACCA ACTCCAAGAG GCCCGCTGGT TTCTTAAAAG CCTGCATAGC
CGCAATGAAA CCTTACTTAA AGTCACCTGT TGTATTGTTG AGCGACAGCA GGGTTTCTTG
GAACACGGCG AAGAAGCCAT GCGTCCTTTA GTGTTACACG ATATTGCAGA AGCAGTCTCC
ATGCATGAAT CCACGATTTC TCGAGTCACC ACTAACAAAT ACATGCATAC TCCACGGGGA
ATATATGAAC TAAAATACTT TTTTTCCAGC CATGTGGCTA CCAGTAGTGG AGGAGAATGT
TCCGCAACGG CCATCCGTGC TCTTATCAAG AAATTAATAG CCGCGGAAAA ACCTCGCCAA
CCTCTAAGCG ATAGTAAAAT CGCCCAAATC TTGGCCGAAC AAGGCATTAA AGTGGCGCGG
CGTACTATTG CCAAATATCG GGAAAATCTA AGCATACCCC CTTCCAACGA GCGAAAACGC
TTGATCTAG
 
Protein sequence
MKTSLQLRLG QQLTMTPQLQ QAIRLLQLST LELQTEIQQA LESNPLLEQN EEGQEPLEAD 
GLKNEALDSE GSELTTSLAQ ETIPEELPVD TSWNDIYDSL PLPAASGNES SPDLENQDKG
GETLQEHLLW QAHLAITNEK DFVIAATIID SINEEGYLCS TFEEIQESLG KDIEVELDEI
EVILHQIQNF EPSGVGARDL AECLLLQLKQ YPPTTPWLKE AKLLLSQHLI TLGKRDYMQL
MRVMKLLEQE LQAVIHLIQS LNPRPGHQIQ PSKTEYVVPD IYVTKHKGCW QVELNPDTAP
RLRVNSQYAS LIKRADDSLA NSYLKNQLQE ARWFLKSLHS RNETLLKVTC CIVERQQGFL
EHGEEAMRPL VLHDIAEAVS MHESTISRVT TNKYMHTPRG IYELKYFFSS HVATSSGGEC
SATAIRALIK KLIAAEKPRQ PLSDSKIAQI LAEQGIKVAR RTIAKYRENL SIPPSNERKR
LI