Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2793 |
Symbol | |
ID | 3705273 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | + |
Start bp | 3166839 |
End bp | 3168287 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637739269 |
Product | sigma-54, RpoN |
Protein accession | YP_344770 |
Protein GI | 77166245 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.127883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACAT CTCTTCAGTT ACGCCTTGGG CAACAACTGA CGATGACGCC CCAGTTGCAG CAAGCTATTC GTCTGTTGCA ACTTTCAACC TTGGAACTAC AAACCGAGAT CCAGCAGGCA TTAGAGTCTA ATCCTCTGCT TGAGCAGAAC GAAGAGGGGC AGGAGCCTTT AGAAGCCGAT GGCTTAAAGA ACGAAGCCCT TGATTCTGAA GGCAGTGAGT TAACTACTTC ACTGGCGCAA GAGACAATCC CAGAGGAATT ACCGGTAGAC ACGAGCTGGA ACGATATCTA TGACAGTTTA CCGTTGCCGG CTGCCTCTGG AAACGAATCT TCACCTGATC TAGAAAACCA AGACAAGGGG GGAGAAACCC TGCAAGAGCA CTTGCTATGG CAGGCGCATT TGGCTATCAC CAACGAGAAA GATTTTGTCA TTGCGGCCAC TATCATCGAT TCGATTAATG AAGAAGGCTA TCTATGCAGT ACCTTTGAAG AAATACAAGA AAGTCTAGGA AAGGACATAG AGGTAGAACT TGATGAGATC GAAGTCATAT TACACCAGAT ACAAAACTTC GAGCCTTCTG GAGTTGGCGC ACGTGACTTA GCTGAGTGTC TGTTGTTACA ACTGAAACAA TATCCTCCCA CCACCCCTTG GCTAAAAGAA GCCAAGCTGC TCCTGTCCCA ACATCTCATA ACTCTGGGAA AACGGGACTA TATGCAATTG ATGCGGGTGA TGAAACTATT AGAACAAGAA CTACAAGCCG TTATCCATTT AATCCAATCG CTCAATCCAC GGCCAGGCCA TCAAATACAG CCGAGTAAAA CCGAATACGT TGTGCCTGAT ATCTATGTCA CTAAACACAA AGGCTGTTGG CAAGTCGAAC TTAACCCCGA TACCGCCCCA CGCTTACGGG TCAATAGCCA GTATGCTAGT CTTATCAAAC GAGCCGACGA TAGTCTCGCT AATAGTTATC TCAAAAACCA ACTCCAAGAG GCCCGCTGGT TTCTTAAAAG CCTGCATAGC CGCAATGAAA CCTTACTTAA AGTCACCTGT TGTATTGTTG AGCGACAGCA GGGTTTCTTG GAACACGGCG AAGAAGCCAT GCGTCCTTTA GTGTTACACG ATATTGCAGA AGCAGTCTCC ATGCATGAAT CCACGATTTC TCGAGTCACC ACTAACAAAT ACATGCATAC TCCACGGGGA ATATATGAAC TAAAATACTT TTTTTCCAGC CATGTGGCTA CCAGTAGTGG AGGAGAATGT TCCGCAACGG CCATCCGTGC TCTTATCAAG AAATTAATAG CCGCGGAAAA ACCTCGCCAA CCTCTAAGCG ATAGTAAAAT CGCCCAAATC TTGGCCGAAC AAGGCATTAA AGTGGCGCGG CGTACTATTG CCAAATATCG GGAAAATCTA AGCATACCCC CTTCCAACGA GCGAAAACGC TTGATCTAG
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Protein sequence | MKTSLQLRLG QQLTMTPQLQ QAIRLLQLST LELQTEIQQA LESNPLLEQN EEGQEPLEAD GLKNEALDSE GSELTTSLAQ ETIPEELPVD TSWNDIYDSL PLPAASGNES SPDLENQDKG GETLQEHLLW QAHLAITNEK DFVIAATIID SINEEGYLCS TFEEIQESLG KDIEVELDEI EVILHQIQNF EPSGVGARDL AECLLLQLKQ YPPTTPWLKE AKLLLSQHLI TLGKRDYMQL MRVMKLLEQE LQAVIHLIQS LNPRPGHQIQ PSKTEYVVPD IYVTKHKGCW QVELNPDTAP RLRVNSQYAS LIKRADDSLA NSYLKNQLQE ARWFLKSLHS RNETLLKVTC CIVERQQGFL EHGEEAMRPL VLHDIAEAVS MHESTISRVT TNKYMHTPRG IYELKYFFSS HVATSSGGEC SATAIRALIK KLIAAEKPRQ PLSDSKIAQI LAEQGIKVAR RTIAKYRENL SIPPSNERKR LI
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