| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2771 |
|---|
| Symbol | |
|---|
| ID | 3705501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 3145055 |
|---|
| End bp | 3146431 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637739247 |
|---|
| Product | ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_344748 |
|---|
| Protein GI | 77166223 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
[COG4174] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.519421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACCT ATGTCATCCG CCGCCTGCTC CTGATGATTC CGACCCTGCT GGGCATCACC
CTGGTGGTAT TCGCTGTAAT GGCCGCTTCC CCCGGCGGCA TCAGCGCCCA AAGCCTCATC
GAGGGCCAAA ATCTGGAACC CCAGGCTAAA AAAGCATTAG AAGACTATTA CAATCAACTG
TACGGTCTGG ATTCACCGCC AGCCATCCAG TATCTGCGGT GGCTGAACAA TGCCTCCCCC
GCAGGATTTA CCTTTGATGA GGAAAACCAT ATCAGCGGTT TTTCCCTCTG GAAGGGCTCC
GATCTGGGCA CCAGCTTCCG CTACGGCCGG CCTGTGCTGG AGCTGATTGA GGAGCGGGTG
CCTATCACCT TGCTGCTCAA CATCCTTTCC TTGCCTTTTA TCTACACCTT GGCGATTGCC
GTTGGGGTCC GTGCCGCTAC TGAGCGGGGC AAAGTATTCG ATGTAGGCTC CAGCGCTTTG
CTATTAGGAC TATGGTCCGT CCCCGTCATG CTGACTGGAG TTTTATTGAT CGGCTTTTTT
GCCAGCAATC AATACTGGCA TTGGTTTCCC ACGGCCGGTC TAAACACCCG CGAAGCGCTG
GACATGCCCT TCTTGCCCCA CTGGGGTTCC CTGGGGGAAG CGGCTCTTCT GCTCGTCGCT
GGCGTGGCGG GCGCGGGCGC GGGTGTCGGA CTGGCGAAAG CGCCCCGCCT GCTTCGGGTT
GGCCTGTTAG CCGGGCTGGG GATGGGCCTG GGGTTCTGGA TGGGCGCTGG CCTACCCCAC
CCCCATTTGG GAATGAGTCT TTCCCTCGGG GTGCTGCTTG CGCTGATAAT TGGAGGACTC
GGCTATACGG ATTACGCTGG TCTGCGTCTG GGATTATTAG GGTTATTGGG CGCGGGATTA
GGCTTGACTG TTGCTGCCCA AGGGGGAGAT GGGGAGTTTG TGCGTGGTTT TTTGCTGGAT
CGACTCTGGC ACCTGGTGCT GCCAGTCCTG TGCCTAACCT ATAGTGGTTT CGCCTTTCTT
TCCAAACTCA CCCGCACCGC CGTACTGGAA AATCTCATGG CTGACTATGC CCGTACCGCC
CGAGCCAAGG GTCTAGCCGA AAATACGGTG CTCTGGAAGC ATGTATTTCG CAACAGCCTC
CTTCCCCTTA TTACCGTTTC AGCCACGCTT CTTCCTGGCT TGCTAGCTGG TTCAGTTATT
GTGGAGTCTA TCTTCTCCAT CGAGGGAATG GGCAAGCTGG CGGTAGAGGC CGTCCAAACC
CGAGACCGGG AATTAGTACT GTCTATTACC CTTATCAGTG GCCTGTTAAC CCTAGCCGGC
TATCTCATCG CCGATCTTTG TTACGCGATT GCCGATCCCC GCGTAAGTTA TGACTAA
|
|---|
| Protein sequence | MSTYVIRRLL LMIPTLLGIT LVVFAVMAAS PGGISAQSLI EGQNLEPQAK KALEDYYNQL
YGLDSPPAIQ YLRWLNNASP AGFTFDEENH ISGFSLWKGS DLGTSFRYGR PVLELIEERV
PITLLLNILS LPFIYTLAIA VGVRAATERG KVFDVGSSAL LLGLWSVPVM LTGVLLIGFF
ASNQYWHWFP TAGLNTREAL DMPFLPHWGS LGEAALLLVA GVAGAGAGVG LAKAPRLLRV
GLLAGLGMGL GFWMGAGLPH PHLGMSLSLG VLLALIIGGL GYTDYAGLRL GLLGLLGAGL
GLTVAAQGGD GEFVRGFLLD RLWHLVLPVL CLTYSGFAFL SKLTRTAVLE NLMADYARTA
RAKGLAENTV LWKHVFRNSL LPLITVSATL LPGLLAGSVI VESIFSIEGM GKLAVEAVQT
RDRELVLSIT LISGLLTLAG YLIADLCYAI ADPRVSYD
|
|---|
| |