Gene Noc_2675 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2675 
Symbol 
ID3704431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp3030473 
End bp3032266 
Gene Length1794 bp 
Protein Length597 aa 
Translation table11 
GC content52% 
IMG OID637739156 
ProductLipid A export ATP-binding/permease protein MsbA 
Protein accessionYP_344658 
Protein GI77166133 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGTTTA CTCCTTCCCT GAACTCCGGG CTTGCGGTTT ATCGCCGCCT ACTTAGCTAC 
ACTCGACCTT ACCGCTGGAT CTTCGCTGCC TCAATTATCA CAATGGCCAT TTATGCAGCG
ACTGAAACGG GCCTAGCAGC CCTCATGAAA CCCTTGATGG ACGGAAGCTT CATTGAGCGT
GATCCGGCTA CCATCCAGAT TATCCCCCTC CTATTAATTG GGCTCTTTGT GATCCGGGGC
GGCGCCAACT TTATCACTCA ATATGGCCTA AAATGGGTGG CTCGCCGTGT TGTGAGGGAC
TTGCGGGAAC AGATGTTTTG CCACCTCCTT GCCCTCCCGG CGCGCTACTA TGATCAAAAA
GCTTCCGGTC AGCTACTCGC CAAGCTTATT TATGATGTGG AACAGGTTTC CAATGCAGCC
ACAGACGCCA TCCTCACTAT CATCCGCGAC TCCCTGACCA TCCTGGGGCT ACTTGCCTGG
ATGGCCTATT TAAATGGTTT GCTCACCCTT ATCATTTTAG TCACGGCGCC TCTGATTGCC
CTTATCATTT GGTGGGTTAG CCACCGATTC CGCCGTATTA GCCGTAAGAT TCAAAACTCC
ATGGGCGATG TCAGCCAGGT GGCCCAGGAA ACCATTGAAG GTCATCGGGA AGTCAAGATA
TTTGGTGGGC AAACCTACGA AGCGGAACGT TTCGACCAGG TCAATGAGCA AAACCGCCGG
CAAACCATGA AAATGGCGGC CACCGACGCC ATCAGTCAGC CCGTCGTTCA GCTTATCGCC
GTGCTAGGGT TAGCCGGTGT CATTCACCTA GCTACCCGCG AATCCATGCT AGCTCAAATT
AGCGTGGGTA CCTTTATTTC CTTTATCACC GCCATGATGT TGCTACTTGG CCCTGTTAAG
CGCCTTACTA AAATCAACGG GACTTTACAG CGGGGCATTG CCGCGGCTCA AAGCATCTTT
GGCCTATTGG CAGAAACACC CGAAGCGGAT CGTGGGCAGC AATCTCTGAG ACGCGCCCGG
GGCGCAATCC GCTTTGAACA CTTATCTTTT TGCTATGAAC CTGCCAAAGG TCCAGTGCTT
GAAAACATTG ATCTGGAAAT CAAACCGTAC CAAACCATTG CCCTAGTAGG CCATTCAGGC
AGCGGCAAAT CCACTTTAGT GAGCTTACTC GCCCGTTTCT ACGAAACTAC TTCTGGGCGT
ATCCTCATCG ATGAAATGGA TATCCAAACA CTCCGCCTTA CTGAACTACG CCGGCAAATC
GCCCTAGTCA GCCAGCAAAT CATCTTATTC AATGACACCA TCGCCCATAA CATTGCCTAT
GGCAGCTACC AACAAACCAG CAAACAAGAC ATCATCCGCG CCGCCGAAGC CGCCCATGCC
ATGGAATTTA TTAATCGCTT GCCCGACGGT TTGGACACGG TTATTGGCGA AAAGGGGGTT
TTGCTCTCCG GCGGCCAGCG GCAACGTCTC GCGATTGCCA GGGCCCTGCT CAAGGATGCT
CCCATCCTCA TTTTAGACGA AGCCACCGCT TCCCTAGACA CCGAGGCTGA ACGGCATATC
CAAGCAGCCC TAGAAACCCT GATGCGCCAG CGGACAACGC TGGTTATCGC CCATCGACTA
TCCACTGTAG AAAACGCCGA TCAAATCATC GTGCTTCATC AAGGCCAGAT TATAGAAAGA
GGAACCCATA GCCAGCTTCT TGCCCGCGAA AGTCACTATG CTGGACTCTA CCGTTTACAA
TTTCGCCATA GCCATGAGCA CGTTTCACCC CTGAGCGCAA ATGTCGGATT ATAG
 
Protein sequence
MTFTPSLNSG LAVYRRLLSY TRPYRWIFAA SIITMAIYAA TETGLAALMK PLMDGSFIER 
DPATIQIIPL LLIGLFVIRG GANFITQYGL KWVARRVVRD LREQMFCHLL ALPARYYDQK
ASGQLLAKLI YDVEQVSNAA TDAILTIIRD SLTILGLLAW MAYLNGLLTL IILVTAPLIA
LIIWWVSHRF RRISRKIQNS MGDVSQVAQE TIEGHREVKI FGGQTYEAER FDQVNEQNRR
QTMKMAATDA ISQPVVQLIA VLGLAGVIHL ATRESMLAQI SVGTFISFIT AMMLLLGPVK
RLTKINGTLQ RGIAAAQSIF GLLAETPEAD RGQQSLRRAR GAIRFEHLSF CYEPAKGPVL
ENIDLEIKPY QTIALVGHSG SGKSTLVSLL ARFYETTSGR ILIDEMDIQT LRLTELRRQI
ALVSQQIILF NDTIAHNIAY GSYQQTSKQD IIRAAEAAHA MEFINRLPDG LDTVIGEKGV
LLSGGQRQRL AIARALLKDA PILILDEATA SLDTEAERHI QAALETLMRQ RTTLVIAHRL
STVENADQII VLHQGQIIER GTHSQLLARE SHYAGLYRLQ FRHSHEHVSP LSANVGL