| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2616 |
|---|
| Symbol | |
|---|
| ID | 3704507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2971860 |
|---|
| End bp | 2973212 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637739097 |
|---|
| Product | Type I secretion outer membrane protein, TolC |
|---|
| Protein accession | YP_344599 |
|---|
| Protein GI | 77166074 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.930678 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTTTCG TAAAAAACGG CTTTTTTCTA ATTATCTTTG GTTTCGTTGC CTCTTGGCCT
GTCCAAGCTT CTGACCTGCT GGAAGTTTAT CGCTTGGCGC GGGGGAACGA TCCCCAACTG
TGGGCTCAGG TGGCAGCAGT GCAGGCCGCA TTAGAAGCCA AGCCTCAAGC CAGGGCGTTA
TTTTTTCCAA CGGTCGATAT TTCCTCCAAT TTTAACTGGA CTACTCAGAA TCTCACCTTG
CTCCAGCAAC GGGTAGATCC AGATACTGGC TTTACCATTC CTGGTTTTAA GGGGTCATTT
ATTAATTATG GTTATAGTCT GAACTTAGCC CAACCGATAT ACCAGCGGGA AAATTTTGTT
CTCCTCAAGC AGGCGGACGC TACTATTGCC CAGGCCCGGG CAAATTTGGT AGCTGAGGAG
CAAGGGTTAT TGGTTCGGGC GTCTGAGCGT TATTTTGGCG TGCTTACGGC TCAAACAGGA
CTTTCCTTTG CCCAAGCGGA AAAAGAGGCC ATTGCCAAGC AGTTGGAGCA GACCAAGCAG
CGCTTCGAAG TGGGGATGAA TACGATTGTG GATGTCAATG AGGCCCAGGC TGCTTATGAT
TTGGCGGTTG CGCAGGTAAT CGCTGCTGAA AACGCCCTTT CCAATAGTTA TGAGCAATTA
CGAGAGGTGA CAGGGCAATA CGTTCGAGAT CTGGCCGATC TGAAAGACAA TACTCCCTTG
CTGAAACCAG ATCCCATGAA TATCGATCGA TGGGCCGAGA CCGCGCTGCA GCAAAACCCC
CAAATTGATG CCTCGGCGGC GGCGGTGGAT AATGCCCGCC AAGAAATACA ACGGCAGAAA
TCCGGCCATT ATCCTACGCT GGAGGTGGTG GGTTCTAAAT CCACCAATGT GACGGGGGGA
GGACGTTTTG GGGGGTTCCA AAACGATATG GACGTCATTG GGTTGCAATT TAATTTGCCC
CTCCTCCAGG GTGGGGCCGT AGTGTCCCGC ACCCGGGAAG CTCAGCACCA GCTAAAACAA
GCTCTGGAGC AGCTAGAGCA GGCTCGGCGG CAGGTTTTCC GCCAGACCCG CGAGGCTTAT
TTGGGCGTTG TGTCTGAAGC TAGTCAGGTC AAGGCTCTGC AGCAGGCTAT TGTCTCCAAT
CAAAGCTCTC TTGAAGCAAC CGAAGCAGGT TTTGACGTGG GGACCCGCAC TACTGTAGAT
GTGCTCAACG TACGGCGCGA CTTGTTCCGT GCCCTTCGGG ATCATGCCCA GTCTCGTTAT
GAACACCTGC TCGATACCTT GCGCCTGAAG CAAGGGGCGG GCATTATTAC GTTGCGAGAT
CTGGAGGAAA TCAATCAGTT GTTACAGGAA TAA
|
|---|
| Protein sequence | MAFVKNGFFL IIFGFVASWP VQASDLLEVY RLARGNDPQL WAQVAAVQAA LEAKPQARAL
FFPTVDISSN FNWTTQNLTL LQQRVDPDTG FTIPGFKGSF INYGYSLNLA QPIYQRENFV
LLKQADATIA QARANLVAEE QGLLVRASER YFGVLTAQTG LSFAQAEKEA IAKQLEQTKQ
RFEVGMNTIV DVNEAQAAYD LAVAQVIAAE NALSNSYEQL REVTGQYVRD LADLKDNTPL
LKPDPMNIDR WAETALQQNP QIDASAAAVD NARQEIQRQK SGHYPTLEVV GSKSTNVTGG
GRFGGFQNDM DVIGLQFNLP LLQGGAVVSR TREAQHQLKQ ALEQLEQARR QVFRQTREAY
LGVVSEASQV KALQQAIVSN QSSLEATEAG FDVGTRTTVD VLNVRRDLFR ALRDHAQSRY
EHLLDTLRLK QGAGIITLRD LEEINQLLQE
|
|---|
| |