| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2438 |
|---|
| Symbol | |
|---|
| ID | 3704595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 2784783 |
|---|
| End bp | 2785331 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637738919 |
|---|
| Product | sigma 54 modulation protein/ribosomal protein S30EA |
|---|
| Protein accession | YP_344423 |
|---|
| Protein GI | 77165898 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTAC CTATACAAAT TAGCTTTCGC CATATGGAGC CGTCCCTAGC TGTAGAGGAC
AAAATTCGCA AAAAAGCCGC TAAATTAGAG CAATTTCACG ATCGGATCAT GGGCTGCCGA
GTGGTAGTCG AAGCTCCCCA CCAGCATCAT CACCAGGGCA AACTTTACCA TGTTCGTATC
GACCTGACAG TGCCAGGAGG AGAATTGGTA GTCAGTCGCG AACATCATGG GAAGCAAGCT
CATCAAGACG TATATGTTGC CATCCGAGAC GCCTTTAATG CCGCGCAGCG CCAACTTGAA
AGCCACATCC AACGGCAACG GGGCCATGTT AAATATCATG AGCCGCCACC CTCTGGCCGT
ATATCAGTGC TCGTCCCTGA ACAAGACTAC GGTAAAATTG AAACCATTGA TGGCCGGGAA
ATTTATTTCC ACAAGAATAG CATCCTGAAT GGGGGATTTA AGGAGCTCAA AGTTGGCAAT
GAGGTACATT TCATTGAAGA AGAGGGAGAT TTAGGTCCTC AGGCAAGTAC TGTCCATATT
AAGAACTAA
|
|---|
| Protein sequence | MQLPIQISFR HMEPSLAVED KIRKKAAKLE QFHDRIMGCR VVVEAPHQHH HQGKLYHVRI
DLTVPGGELV VSREHHGKQA HQDVYVAIRD AFNAAQRQLE SHIQRQRGHV KYHEPPPSGR
ISVLVPEQDY GKIETIDGRE IYFHKNSILN GGFKELKVGN EVHFIEEEGD LGPQASTVHI
KN
|
|---|
| |