| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2349 |
|---|
| Symbol | secF |
|---|
| ID | 3704771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2693067 |
|---|
| End bp | 2694005 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637738832 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_344337 |
|---|
| Protein GI | 77165812 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAC TTAAAAAAAA TCTCCGTATT GATTTCATGG GCAAGCGCCG CCTTGCCTTT
GCATTTTCCC TGGCGTTGCT TCTTATTTCT ATAAGCTCGC TGATTTTTCA GGGACTGAGT
TTTGGCATTG ATTTCACCGG CGGAACTTTA TTGGAAGTGG GTTATGAACA GCCGGTAGAA
CTATCGGATG TGCGCCAGAA TTTGGAAGAA GCAGGGTTCG GTGGTGCCAT TGTGCAGCAT
TTTGGCACCA CGCGGGATGT ATTGATTCGC TTGGCGCCGG AAGCTGAACG CAGCAGTGCC
GAGGTTAGCG AGGAAATATT GGCCACCTTG CAGAAAAGCC GTGATAATCC GGCCACCATG
CGGCGGGTGG AGTTCGTGGG TCCTAAGGTG GGGAAAGATC TCACCGAGCA GGGAGGACTC
GCGGTACTCT ATGCGCTAAT TGGCATTTTG ATTTATGTTG CCTTGCGCTT CGAGTACCGG
CTTGCCATTG GTTCGGTGGT TGCCTTGATA CACGATGTGA TTATCGTGCT GGGTCTGTTC
TCCCTCCTGC ATTTTGAGTT TGATCTTACC GTACTGGCAG CGATTCTTGC GGTCATTGGT
TATTCCCTTA ACGATACTAT CGTGGTGTCG GATCGGATCC GGGAAAATTT CCGCAAAATA
CGGAAGGGGA CAGCAAAGCA AATAATTAAT ACCTCTATAA ACCAGACTTT ATCCCGTACC
ATAATGACCT CTTTGACCAC CTTGCTCGTT CTCTTTGCTC TATTTTTATT TGGCGGCGAA
ACAATCCATA GTTTTTCCAC CGCTCTTATT GCGGGCATTG TGGTAGGCAC TTATTCTTCA
ATTTATGTTG CCACTCCCAT GGCTCTGGCC TTAGGAATTA GTAAAGCGGA TCTGGCTTCT
ACTCCCAAGG AAGGAAAAAA GCTGGATGAG CGGCCTTAA
|
|---|
| Protein sequence | MKLLKKNLRI DFMGKRRLAF AFSLALLLIS ISSLIFQGLS FGIDFTGGTL LEVGYEQPVE
LSDVRQNLEE AGFGGAIVQH FGTTRDVLIR LAPEAERSSA EVSEEILATL QKSRDNPATM
RRVEFVGPKV GKDLTEQGGL AVLYALIGIL IYVALRFEYR LAIGSVVALI HDVIIVLGLF
SLLHFEFDLT VLAAILAVIG YSLNDTIVVS DRIRENFRKI RKGTAKQIIN TSINQTLSRT
IMTSLTTLLV LFALFLFGGE TIHSFSTALI AGIVVGTYSS IYVATPMALA LGISKADLAS
TPKEGKKLDE RP
|
|---|
| |