| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2330 |
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| Symbol | |
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| ID | 3704729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 2669642 |
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| End bp | 2673853 |
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| Gene Length | 4212 bp |
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| Protein Length | 1403 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637738809 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_344318 |
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| Protein GI | 77165793 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000376079 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGATT TGCTGAATTT GCTTAAGCAG CAAAACCAGG TAGAGGAGTT CGATTCCATA
CGCATTGGTC TGGCATCTCC CGATATGATC CGGGCTTGGT CATACGGCGA AGTCAAGAAG
CCTGAAACCA TTAATTATCG AACTTTTAAG CCAGAGCGGG ATGGACTGTT TTGCGCTAAG
ATTTTTGGCC CGGTCAAAGA CTATGAGTGC TTATGTGGTA AATATAAGCG CCTCAAACAT
CGCGGCGTTA TTTGTGAGAA ATGCGGAGTA GAGGTGACGC TAGCAAAAGT TCGTCGGGAG
CGCATGGGGC ATATTGAGCT GGCGAGTCCG GTAGCTCATA TTTGGTTTCT AAAATCATTG
CCTTCGCGGA TTAGCCTACT GTTAGATATG ACGCTCCGGG ACATTGAGCG GGTGCTTTAT
TTCGAGGCCT CTGTGGTTAT TGATCCAGGT ATGACCCCAT TAGAACGGGG ACAACTCTTA
GCGGACGAGG CTTACCTTCA AGCCATTGAG GAATATGGTG ATGAGTTTGA TGCTCGTATG
GGAGCAGAAG CTGTTCAGAA GATGTTAAAA ACCCTTGACC TCAAGGGAGA GGCGATTAGG
CTGCGCGAGG AGATCACAGG CACGAACTCT GACACCAAAA TCAAAAAATT TAGCAAGCGG
CTCAAGCTTA TCGAGGCTTT CATCGATTCG GGCAATCGTT CTGAGTGGAT GATTCTGGAG
GTCCTCCCCG TATTGCCACC GGATTTACGG CCTTTAGTGC CGTTGGAAGG GGGGCGTTTT
GCTACTTCCG ATCTGAATGA TCTGTACCGG CGGGTCATTA ATCGGAATAA TCGCCTCAAA
CGGCTGTTAG ATTTGAATGC GCCTGATATT ATCGTGCGCA ATGAAAAGCG TATGCTTCAG
GAATCCGTGG ATGCTCTTTT GGATAACGGA CGCCGTGGGC GGGCGATCAC AGGTACTAAT
AAGCTACCTT TAAAATCGTT AGCTGATATG ATCAAAGGTA AGCAGGGTCG GTTTCGGCAA
AACTTGTTAG GGAAACGAGT GGATTATTCA GGCCGATCGG TAATTGTGGT GGGTCCAACC
CTAAAGCTAC ACCAGTGTGG TTTACCCAAA AAAATGGCAC TGGAGCTTTT TAAGCCTTTT
ATCTTCGGTA AGCTTGAGCG GGCTGGGCTT GCTACCACGA TTAAAGCGGC AAAGAAATTA
GTGGAGCGGG AAGGCCCAGA GGTATGGGAT GTGTTAGAGG AGGTGATCCG TGAGCATCCG
GTGATGCTTA ATCGGGCCCC TACCTTACAT CGTCTTGGTA TTCAAGCCTT TGAGCCGGTG
CTCATTGAAG GTAAGGCAAT TCAACTCCAC CCCTTAGTGT GCGTGGCCTT TAATGCCGAC
TTTGACGGTG ACCAGATGGC GGTTCATGTG CCGCTATCCT TGGAGGCTCA GCTGGAAGCC
CGTGCGTTAA TGATGTCTAC CAACAATATT CTATCGCCAG CTAATGGAGA GCCCATTATT
GTTCCTACCC AGGATGTCGT ATTAGGGCTC TACTACATGA CCTGCGAGCG GGTAAATGCT
AAGGGTGAGG GGATGCTCTT CGCCGATATC AATGAGGTGC GTCGTGCCTA TGAGACCAGT
ATAGCTGAAC TCCATGCAAA AATCTCAGTG CGCATTACCG AGATAGATCC CTCTAAGCCG
GAAGGTGAAG GCGAGACGAC TCGCCTTGTT AATACTACAG TGGGGCGGGC CCTACTCTCA
GAACTTTTGC CCCCAGGGCT ACCTTTCGAA TTAGCTAATA AGAATATGAC CAAGAAAGAA
ATTTCTAGGT TGGTTAATAT TTGCTATCGG CGCCTTGGCC TTAAGACCTC GGTAGTGTTT
GCTGATCGGC TGATGTACCT TGGATTCCGG CAGGCGACTC TTAGCGGTAT TTCCATTGGT
GTTAATGACA TGGTGGTGCC AAAAGAAAAG CAAGCGATCC TTGCCGATGC GGAAGAAGAG
GTTAAGGAAA TAGAGGACCA GTATGCTTCC GGCCTAGTGA CCAATGGCGA GCGCTACAAT
AAAGTTGTGG ACATTTGGTC CCATACTAAT GATCAAGTTG CCAAGGCGAT GATGGAGCGC
CTAGGAAGTG AAGAGGTATA TGATGCAAAA GGCAATGTTG TCAAGCAGCA GACTTTTAAT
TCTATCTATA TGATGGCTGA TTCTGGAGCC CGTGGATCGG CCGCCCAAAT TCGCCAGCTT
GCGGGTATGC GTGGCTTGAT GGCTAAACCG GACGGCTCGA TTATTGAGAC ACCGATTACT
GCTAATTTTC GTGAAGGATT GGATGTCCTA CAATATTTCA TCTCTACCCA TGGAGCCCGC
AAGGGTTTGG CCGACACAGC GTTAAAAACC GCTAATTCAG GGTATTTGAC CCGGCGCTTA
GTGGATGTAG CTCAAGATTT AGTCGTTACA AAGGATGATT GCGGCACCAC ACGTGGGATT
AATATAACCC CCTTCGTAGA GGGTGGTGAT GTTGTGGAAC CATTACGAGA GCGCGTGCTG
GGGCGGGTAT TAGCGCTTAA TGTTTATGTG CCAGGAAGCA ATGAAGTAGC TATACCTGCC
AGTACGTTAC TGGATGAGTC CTGGGTTGAT TATCTTGAGA CGTTAGGCAT CGACGCGGTG
AAGGTGCGTT CACCTATTAC CTGTGAGACT CGTTATGGAA TCTGTGCTGC TTGCTATGGT
CGGGATCTGG GGCGAGGTTA CCGTATCAAT ATCGGCGAAG CTATTGGTGT TATTGCTGCT
CAGTCTATCG GTGAGCCGGG TACACAGCTC ACTATGCGTA CTTTCCATAT TGGGGGGGCG
GCCTCTCGAA CGGTGACGAC TGATAGGATT GAAGTTAAGT ATAAGGGTAA CATTCGGCTG
CATAATGTCA AAATTGTTCA GCATGACAGT GGTAAGTATG TTGCTGTCTC CCGTTCCGGT
GAAGTCCACA TAGTCGATGA ACAAGGGCGT GAGCGGGAAC GCTATAAGAT TCCTTATGGC
GCCGAGCTTT CAGCAGGGGA TGGTGATACA GTAGAATCGG GGCAAGTCAT TGCTACTTGG
GCTCCTCATA CTCATCCAGT TATCACTGAG GTGGCGGGTA AGGTCAGACT TCAGGATTTT
CTGGAGGGTA GCACCGTAGA ACGCCAGGCT GATGAAGTGA CCGGTTTGAC TAGCCTTACG
GTACTCGATC CCAAGCAGCG AGGCGCCGCT GTTAAAGAAT TGCGTCCGAT GGTTAAATTG
GTTGATGAAA CAGGAAGCGA TCTGTGTCTT GCAGGAACAG ATATTCCCGC CCATTATTAT
TTGCCAGCAG GAGCGGTCGT TTCAGTAGAA GATGAGGCCA TGGTTGGCGT GGGTGATGTA
TTGGCGCGAT TACCCCAAGA ATCTAGCAAA ACCCGTGATA TTACGGGCGG TTTGCCGAGA
GTAGCAGACC TTTTTGAAGC TCGAAAACCA AAAGACCCAG CGGTGCTTGC CGAAATTTCA
GGGACGGTAA GTTTTGGTAA GGAAACCAAA GGAAAGCAGC GGCTTATCAT CACTGGCAGT
GATGGCGAGC GGCATGAGGA ATTGATTCCT AAGTGGCGTC AAGTCAATGT GTTCGAAGGC
GAACATGTTG AAAAAGGCGA AGCGATCGTC GATGGGCCAC CTGTGCCGCA TGATATTTTG
CGTTTAAGAG GTGTGGAGGA GCTAACTTAT TATATTGTTA ACGAAGTTCA GGAGGTATAT
CGCCTTCAAG GGGTAAAAAT CAATGATAAG CACATTGAAG TCATTATCTG TCAAATGCTT
CGCAAGGTAG AAATAATAGA GCCTGGAGAT ACTAGTTTTC TTAAGGGCGA GCAGATCGAT
AAGCCAAGAT TGCTGGAAGA AAATGAAAAA ATGGAGAAAG AAGATAAGTT ACCTGCTCGT
TTTGAGCCGG TACTCCTTGG TATCACCAAG GCTTCTTTAG CCACGGAATC TTTCATTTCA
GCCGCCTCTT TCCAAGAGAC TACGCGGGTG CTTACGGAAG CGGCGGTGAC AGGCAAATGC
GATGAGCTGC GGGGGTTAAA AGAAAATGTA ATTGTGGGTC GTTTAATTCC CGCAGGGACA
GGTTTAGCCT ATCATTCCGA GCGGCGTCGC AAGCGGCGGA TGTTAGAACA GCCAGAATCT
CTGACGGCCG ATACGGGCAC TTCCCATTAT GGTGAAGATG AGATTTCTGA GTCAGGCGCT
GCTACCGCTT GA
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| Protein sequence | MRDLLNLLKQ QNQVEEFDSI RIGLASPDMI RAWSYGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTLAKVRRE RMGHIELASP VAHIWFLKSL
PSRISLLLDM TLRDIERVLY FEASVVIDPG MTPLERGQLL ADEAYLQAIE EYGDEFDARM
GAEAVQKMLK TLDLKGEAIR LREEITGTNS DTKIKKFSKR LKLIEAFIDS GNRSEWMILE
VLPVLPPDLR PLVPLEGGRF ATSDLNDLYR RVINRNNRLK RLLDLNAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGTN KLPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVVGPT
LKLHQCGLPK KMALELFKPF IFGKLERAGL ATTIKAAKKL VEREGPEVWD VLEEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCVAFNAD FDGDQMAVHV PLSLEAQLEA
RALMMSTNNI LSPANGEPII VPTQDVVLGL YYMTCERVNA KGEGMLFADI NEVRRAYETS
IAELHAKISV RITEIDPSKP EGEGETTRLV NTTVGRALLS ELLPPGLPFE LANKNMTKKE
ISRLVNICYR RLGLKTSVVF ADRLMYLGFR QATLSGISIG VNDMVVPKEK QAILADAEEE
VKEIEDQYAS GLVTNGERYN KVVDIWSHTN DQVAKAMMER LGSEEVYDAK GNVVKQQTFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLDVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT KDDCGTTRGI NITPFVEGGD VVEPLRERVL
GRVLALNVYV PGSNEVAIPA STLLDESWVD YLETLGIDAV KVRSPITCET RYGICAACYG
RDLGRGYRIN IGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRTVTTDRI EVKYKGNIRL
HNVKIVQHDS GKYVAVSRSG EVHIVDEQGR ERERYKIPYG AELSAGDGDT VESGQVIATW
APHTHPVITE VAGKVRLQDF LEGSTVERQA DEVTGLTSLT VLDPKQRGAA VKELRPMVKL
VDETGSDLCL AGTDIPAHYY LPAGAVVSVE DEAMVGVGDV LARLPQESSK TRDITGGLPR
VADLFEARKP KDPAVLAEIS GTVSFGKETK GKQRLIITGS DGERHEELIP KWRQVNVFEG
EHVEKGEAIV DGPPVPHDIL RLRGVEELTY YIVNEVQEVY RLQGVKINDK HIEVIICQML
RKVEIIEPGD TSFLKGEQID KPRLLEENEK MEKEDKLPAR FEPVLLGITK ASLATESFIS
AASFQETTRV LTEAAVTGKC DELRGLKENV IVGRLIPAGT GLAYHSERRR KRRMLEQPES
LTADTGTSHY GEDEISESGA ATA
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