| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2207 |
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| Symbol | prpD |
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| ID | 3705145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 2550193 |
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| End bp | 2551644 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637738683 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_344197 |
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| Protein GI | 77165672 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.50931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAATG ACAGACGTTC AGCCCAGCGG CCGCCGCCGG ATGAGGTTCT GACGATCTTA
GCGGATTATG TTCTCCAGGG GGAAGTTAAC CGTCCCGAAG CCTATGAGAC TGCCCATGAC
TGCTTAATGG ACAGCCTTGG CTGTGCTTTG CTCGCCCTGG ATAATCCTGC CTGTACCCGC
CTGCTTGGCC CGATTGTCCC TGGCGTGATT TTCCCCGCGG GCGCCCGGGT GCCGGGAACC
GGCTATGTCC TTGATCCGGT GCAGGCCGCT TTCAATATCG GCATCATGAT CCGCTGGCTG
GATTTCAATG ACACTTGGCT GGCCGCTGAA TGGGGCCATC CCTCCGATAA TCTGGGGGCT
ATTCTAGCCA TTGCCGATTA TTTGAGCCGC CAGCGGCGGC AAGAAGGCGC GCCGCCGCTG
GCGATGCGCC AGGTGCTGAC CGCATTGATC AAAGTCTATG AAATTCAGGG CGTGTTGGCC
TTGGAGAATG CCTTTAATCG GGTGGGATTG GATCATGTGG TGCTGGTACG GGTGGCTAGC
GCCGCCGTGA CAGCAGCTTT ATTAGGCGGT ACTCAGGAGC AGATTATCAA CGCCCTTTCC
AATGCCTGGC TGGACGGGGG GCCCCTGCGG ACCTACCGCC ATGCCCCCAA TACCGGTTCA
CGGAAAAGCT GGGCCGCGGG GGATGCTACC AGCCGGGGGG TGCGTTTAGC TCTTATGGCC
TTGCAAGGGG AGATGGGCTA CCCGTCGGCT TTGACGGCCC CTGGCTGGGG GTTTTACCAG
GTGTTATTCA AAGGAGAGTC CTTTACCTTG CCTCGGGCTT TAGGCAGTTA TGTCGTGGAG
AATATCCTCT TCAAAGTAGC CTATCCGGCG GAGTTCCATG CCCAGACCGC CATTGAGGCG
GCGATTTCAC TCCATCCCCA GGTGACGTCC CGATTGTCGG AGGTGGCACG GATTGTCATT
GAGACCCAGG AACCGGCGGT GCGAATCATC GACAAGACTG GTCCCCTCCA TAATCCTGCG
GATCGGGATC ACTGCCTGCA GTACATGGTG GCGGTAGCCT TGCTGGAGAG CCAGATCACC
ATGAAGGATT ACGAAGATGA ACGGGCCCGG GACCCCCGGA TTGACGCCCT GCGGGAGAAG
ATGGAGGTCA TCGAAAAGAA GGAATTTACC GAGGATTATT TAGATCCCGA GAAACGGGCG
ATTGCCAATG CGGTCCAGGT ATTTTTCAGC GATGGCAGCG CTACCCTCCG GGTGGAGGTG
ACCTATCCTT TAGGCCACCG GCGGCGGCGC GCCGAAGCCT TGCCCCTGCT ACGGGATAAA
TTCCAGAACA GCCTGGGCGG CTGTTTTCCT CCGGAACGTT GCCAGACAAT TTTGGATCTC
TTTAGCGACC GGGAGCGTTT GGCGGCCATG CCCGTGGATG AGTTCATGGA ACTGTTTATT
AGCACGGCCT GA
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| Protein sequence | MSNDRRSAQR PPPDEVLTIL ADYVLQGEVN RPEAYETAHD CLMDSLGCAL LALDNPACTR
LLGPIVPGVI FPAGARVPGT GYVLDPVQAA FNIGIMIRWL DFNDTWLAAE WGHPSDNLGA
ILAIADYLSR QRRQEGAPPL AMRQVLTALI KVYEIQGVLA LENAFNRVGL DHVVLVRVAS
AAVTAALLGG TQEQIINALS NAWLDGGPLR TYRHAPNTGS RKSWAAGDAT SRGVRLALMA
LQGEMGYPSA LTAPGWGFYQ VLFKGESFTL PRALGSYVVE NILFKVAYPA EFHAQTAIEA
AISLHPQVTS RLSEVARIVI ETQEPAVRII DKTGPLHNPA DRDHCLQYMV AVALLESQIT
MKDYEDERAR DPRIDALREK MEVIEKKEFT EDYLDPEKRA IANAVQVFFS DGSATLRVEV
TYPLGHRRRR AEALPLLRDK FQNSLGGCFP PERCQTILDL FSDRERLAAM PVDEFMELFI
STA
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