Gene Noc_2160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2160 
Symbol 
ID3704834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp2495816 
End bp2496526 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content51% 
IMG OID637738636 
Productflagellar biosynthesis protein FliR 
Protein accessionYP_344150 
Protein GI77165625 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1684] Flagellar biosynthesis pathway, component FliR 
TIGRFAM ID[TIGR01400] flagellar biosynthetic protein FliR 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGATGC CACTCTTTGG CAGCAAGGTC GTCCCAGTGC GGATACGCTT AGTGCTTGCC 
CTTGCGCTCA CCGTTGTTAT TGCACCTGTA ATCCCGGCCA CCTCAGTAGC CGCCTTGAGC
GTGGAGGGAG GGTTGCTGGT TATGCAACAG TTCCTAATTG GGTTTGCCAT GGCCTTGGTA
TTACAGATGG TGTTTCAGGC TTTTGCCATA GGAGGACAAA TCGTGGCTAC CCAGATGGGA
TTGGGCTTCG CTTCCTTGAT GGATCCTCAG AATGGAGTGG CTGTTTCTAT GGTCTCGCAG
CTCTATACTG TTCTTATTAC TTTGGTTTTT CTGGGATTAA ATGGCCATTT AGTGGTCATT
CAAGTGTTGG CGGAGAGTTT TTACGTCCTT CCTTTGGGAG TGGAAAGAGC GAGTCTAGGG
GGCTTTTGGC AGCTGGCGGG GGCGGGGAGC TGGATGCTTG CCGGGAGCGT GTTAATCGCT
TTGCCTGCCA TTGGGGCGTT GTCGTTAGTT AATTTGACCT TTGGTGTGAT GTCCCGCGCC
GCTCCTCAAC TTAATCCCTT TTCCATTGGT TTCCCCCTCA CTCTCATCTT GGGATTTTGG
GTGCTTTTAT TTACCTTGCC CAATGCTCCA AGTCATTTGG TCAATCTCAC CGATACTGCT
CTAACGCTTA TCCGCGCTTG GCTAGAGGAA GGGAATAATG GCGGACTCTA G
 
Protein sequence
MAMPLFGSKV VPVRIRLVLA LALTVVIAPV IPATSVAALS VEGGLLVMQQ FLIGFAMALV 
LQMVFQAFAI GGQIVATQMG LGFASLMDPQ NGVAVSMVSQ LYTVLITLVF LGLNGHLVVI
QVLAESFYVL PLGVERASLG GFWQLAGAGS WMLAGSVLIA LPAIGALSLV NLTFGVMSRA
APQLNPFSIG FPLTLILGFW VLLFTLPNAP SHLVNLTDTA LTLIRAWLEE GNNGGL