| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2139 |
|---|
| Symbol | |
|---|
| ID | 3705331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2466230 |
|---|
| End bp | 2467669 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637738615 |
|---|
| Product | peptidase S1C, Do |
|---|
| Protein accession | YP_344129 |
|---|
| Protein GI | 77165604 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0865536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATAGAT ATCGGATGAT TTTGTTATTG CTAGCGGCGC TTTTTGCATT GCCAGCACAG
GCCCTTGAGG AAGGTGGCGT TGAGAGTCTG CGCCAGACGG GTAAGGCCTT TGCCGCCGTG
GCCCGTGAAG TATCACCATC AGTGGTTTTC ATCCAGGTGG AGAGTATCCG TGAGGAACGT
GGTTCGCGGG CGTTTCCTCC ACCCTTTGGC GATGAGTTTT TCAGGCGCTT TTTTGGCGAG
CCCTTTTCGC CCCGGGGCGA GGCGCCAAAA GGCCAGCGCC GTGCCATCGG CCAGGGATCA
GGCTTCATTT TTTCATCGAA AAAGGGCTTG CTGTCGGACA AGACTTATAT TCTTACTAAC
AGCCATGTAG TGGAAGACGC TGACAAGATT CGGGTCCAAT TTCAAGATGA TCGCGAGTTC
GAGGGTGAAA TTGTTGGGAC CGATCCCAAA TCGGATATCG CGGTTATTGA GATTACCGTT
GGCGGTCTTC CAGCCCTGGA ATGGGGAGAT TCTTCCAAGC TTCAAGTAGG GGAATGGGTA
ATAGCCATGG GTAACCCCTT TGGCTTGAGC CATACCCTGA CCGTGGGCGT GGTGAGCGCC
ACGGGCCGCA CCAGCTTAGG CATCAGCGAT TATGAGGATT TTATTCAAAC GGATGCCGCT
ATCAATCCTG GCAATTCCGG TGGTCCCCTG GTAAATCTGA ACGGCGAAGT GGTGGGCGTC
AATACCGCTA TCTTCAGCCG GAGCGGGGGC TATATGGGCA TAGGATTCGC CATTCCCAGC
AAATTAGCCA AGGCTATTGC CAATCAACTC ATTGAAACGG GCGAGGTGAC CCGGGGTTAT
CTGGGAATTG TCATTCAGCC CCTGACGGCG GAGCTGGCGG AATCCTTCAA TATGGAACAG
TCCCAGGGTA TTCTCGTTGC CCAGGTATCG GAGGACTCGC CTGCAAAAAA GGCGGGGCTC
AAGCAAGGGG ATGTGATTGT CGGTTACCAG GATAAGCCGG TTAAAGATAT TGGCGGTTTC
CGTAATCGAG TTGCGCTCAC CGCGCCCGGT AGCCGTGAGA CCCTTACTAT TATCCGCGAT
GGTAAGCGGC AGAAGGTAAA AATTACTATT GGTGAACTCA GCCAAGAGCA GACCCTTGCC
GAAGGGCCTA CCCAGAGCGC GGAAGAATTG GGGTTGGCGG TTCAGACTTT GACTCCGGAG
CTGGCAAGAC AATTTGATGC CAAGGCGGGT GAAGGTGTGG TTGTTACTGG GGTTGAGCGT
GGCTCCATCG CCGCCATGGC GGGGATCAGG GTGGGTAACG TGATTCTCCA GATCAACCGC
AAGCCGATCC ATAGTGCGAA GGAATTCAAT CGTGCCATGC AGGAAAGCCA GGATGATAAG
CGTGCTTTGT TGCTGATTCG TTCAGGTAAT ATGCAACATT ACGTGGTACT GCGCTGGTAG
|
|---|
| Protein sequence | MHRYRMILLL LAALFALPAQ ALEEGGVESL RQTGKAFAAV AREVSPSVVF IQVESIREER
GSRAFPPPFG DEFFRRFFGE PFSPRGEAPK GQRRAIGQGS GFIFSSKKGL LSDKTYILTN
SHVVEDADKI RVQFQDDREF EGEIVGTDPK SDIAVIEITV GGLPALEWGD SSKLQVGEWV
IAMGNPFGLS HTLTVGVVSA TGRTSLGISD YEDFIQTDAA INPGNSGGPL VNLNGEVVGV
NTAIFSRSGG YMGIGFAIPS KLAKAIANQL IETGEVTRGY LGIVIQPLTA ELAESFNMEQ
SQGILVAQVS EDSPAKKAGL KQGDVIVGYQ DKPVKDIGGF RNRVALTAPG SRETLTIIRD
GKRQKVKITI GELSQEQTLA EGPTQSAEEL GLAVQTLTPE LARQFDAKAG EGVVVTGVER
GSIAAMAGIR VGNVILQINR KPIHSAKEFN RAMQESQDDK RALLLIRSGN MQHYVVLRW
|
|---|
| |