Gene Noc_2126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2126 
Symbol 
ID3704930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand+ 
Start bp2449090 
End bp2450220 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content51% 
IMG OID637738602 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_344116 
Protein GI77165591 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.521922 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGCTA CCCTAGAATT AGCAAAAAGG CTGATCGCTT GCGCCTCGAT CACCCCCCGT 
GATGCCGGCT GCCAGGGACT ACTAGCCCAA CGTCTCCTAG CCCTTGGTTT CCAGGGTGAG 
CAGATGAATT TCGGGGAAGT GGATAATATC TGGCTGCGGC GAGGCCAAAA ACCACCGCTT 
TTTGTTTTCG CCGGTCATAC CGATGTCGTC CCCCCAGGAC CACCCGACAA ATGGCTGACT 
GATCCCTTTA CGCCTGAGGT TCGTAATGGC CTGCTTTATG GCCGCGGCGC CGCTGATATG 
AAAGGTAGCC TTGCTGCCAT GGTGACCGCC TGTGAGCACT TTATTAACGT CCATTCAGAC 
CACGCCGGGT CCATCGCTTT TCTACTCACC AGTGATGAAG AAGGTCCGGC AATCAATGGC 
ACTATTAAAG TAGTAGAAAC GCTACAAGCC CGAGGCGAAA AAATCGATTA CTGCCTGGTA 
GGAGAACCCA CTAGCCAGAA ACAAGTTGGA GATATGATCA AAAATGGCCG CCGGGGTTCG 
CTGGGTGGCC GTCTAATTGT ACGTGGAATT CAAGGGCATG TGGCTTACCC TCACTTGGCC 
GATAACCCCA TACATAGTCT AGCACCGGCG CTAGCCGTTC TATGCGCTCA AACATGGGAT 
CAGGGCAATA AAGATTTTCC CCCCACTACC TTTCAAATCT CAAATATTCA AGGGGGAACG 
GGAGCAACGA ATGTCATTCC AGGGGAGGTG GAAATCCTGT TTAATTTCCG CTATTCCACG 
GAAGTTACCC ACCAGCAGCT ACAACAGCAG ATGGAGGAAA TATTATCCCA ACAACGCTTG 
AACTATGAAT TAGAGTGGAC CCTCTCTGGC AAACCTTTCC TCACCGCGCC AGGAAGTTTG 
ATGACGGCGG TTTCTCAAGC AGTACGGGGC ATCACCGGGA TTGATGCAGA ATTTTCTACA 
ACTGGCGGTA CCTCGGATGG AAGGTTTATC GCTCCCACCG GGGCCCAGGT CGTGGAACTT 
GGCCCTGTCA ACGCCACCAT TCACAAAGTC AACGAATGCG TTGCTGTAGC AGATCTGGAG 
ATACTATCCC GAATCTACAG CCGCATATTA GAAATATTAC TTACAGAATA G
 
Protein sequence
MSATLELAKR LIACASITPR DAGCQGLLAQ RLLALGFQGE QMNFGEVDNI WLRRGQKPPL 
FVFAGHTDVV PPGPPDKWLT DPFTPEVRNG LLYGRGAADM KGSLAAMVTA CEHFINVHSD 
HAGSIAFLLT SDEEGPAING TIKVVETLQA RGEKIDYCLV GEPTSQKQVG DMIKNGRRGS 
LGGRLIVRGI QGHVAYPHLA DNPIHSLAPA LAVLCAQTWD QGNKDFPPTT FQISNIQGGT 
GATNVIPGEV EILFNFRYST EVTHQQLQQQ MEEILSQQRL NYELEWTLSG KPFLTAPGSL 
MTAVSQAVRG ITGIDAEFST TGGTSDGRFI APTGAQVVEL GPVNATIHKV NECVAVADLE 
ILSRIYSRIL EILLTE