| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1984 |
|---|
| Symbol | |
|---|
| ID | 3704868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2279740 |
|---|
| End bp | 2281341 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637738460 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_343976 |
|---|
| Protein GI | 77165451 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATGAGC TGTGGTTACA GCTATATAGT TATTGGTGCG GGATTTGGCG TTACCGTTGG
TATGGCGTTC TAATGGCATG GGTGGTGGTG ATTGTGGGTT GGACATATGT GATCCAGATG
CCTGATAGAT ATGAATCCTC AGCACGAGTT TATGTCGATA CTGATTCGCT ACTGCGCCCC
CTTTTGAAAG GATTGGCTAT TCAGCCTAAT GTAGACCAAA GGCTTAGAAT AATGACTCAG
ACTTTATTAA GCCGGCCTAA TTTAGGAAAG GTACTCCGTC AAACCGATAT GGATTTGTCC
GTGACCACGC CGGAGCAGGA AATCAAACTC CTTAACCAGC TTGAAAAAAA TATCCATATA
AAAGGGGCGA GAAGAGATAA TCTATATACA ATTGCATATG AAAATACTGA TCCTCAACTT
GCACAGCGGG TGGTGCAGGC CATATTGAAT ATTTTTGTGG AAAGCACTAT GGGTGCCTCC
CGTAAAGATA GTAATACTGC TCAACAGTTC ATTGGCCAAC AAATTAAAGA ATATGAAAAA
CTGCTTCGTA CTGCTGAACA AAGGTTAATG GACTTTAAGC GGGAGCATGT AGGCATGATG
CCCAATGAAA AGGGCGATTA TTATCAGCGT TTGCAGACTG CGGTAGAGAA TTTACGTACG
GCGCGCACTG AGCTTAATAT GGCGATAGGG CGCCGGGATG TACTTAAACG TCAATTGAGA
GGAGAGGAAC CGGTTTTTGG ATTTGGAACA GGTGGAACAG GAACCTCGTC GAAAGATAGT
AGTCCTGCGG GTATGCGTAT TCAATCCTTG CAAGCGGAAC TAGATGAGGT GTTGCTCAAG
TACACGGATA AACATCCAAA GGTTTCGGCG ATTAAAGAAA CTATTGCGAT GTTACAAAAA
AGAGAAGAGC AGCAATTTTC TTTGCCGCAG AAGCAGCAAG GTGAAGGAGA AGAAGCTAAT
GAAGCGGGAG AATATGCAGT GGGGGGTAAC TTTTATTATC AGCAAATGCA GATTTCTCTG
GCAGAAGCGG AAGCCAATAT TGCTTCTCAA GAAGCGGAAG TTAGCGCCTT AGAGAAAGAT
GTAGAACGGT TGCATGAGCT CGTCGATACT ATTCCTAAGG TAGAAGCGGA ATTAGCTCAG
CTAAATCGTG ACTATGGGGT TTATAAAAGC AACTATCAGC AACTATTAAC CCGCCTAGAA
TCAGCGAAAA TGGGTGAAAG GGTGGAAGAG TCGCCAGATA ATGTTAAGTT TAAAATTGTG
GAGCCGCCTA TACAGCCGCT CCTCCCTTCT GGTCCTGACC GCCCCTTGTT ATTAACGTTA
GTTCTGGTGG TTGCGGGAGG TGCCGGAGGG GCTTTGGCAT TTTTTCTTTC CCAATTAAGG
CCCGTTTTTT ATACCCGCCG GGATTTAGAA GAAGCGACGG GGCTTCCCGT CCTAGGCCCG
GTATCAATGA TATTATCAGG GCGTATTTTA TGGAAGCATC GGCTTAATCT GGCGTTTCTT
CTTACTTTTC TAGGTCTTCT CATCGCTGGA TATGGATTAT TGGTATCCAA TTATCTCTTT
GGTATCAAAA TGTTCGACAC AATTAAGCAT TCGCTTTTTT AG
|
|---|
| Protein sequence | MHELWLQLYS YWCGIWRYRW YGVLMAWVVV IVGWTYVIQM PDRYESSARV YVDTDSLLRP
LLKGLAIQPN VDQRLRIMTQ TLLSRPNLGK VLRQTDMDLS VTTPEQEIKL LNQLEKNIHI
KGARRDNLYT IAYENTDPQL AQRVVQAILN IFVESTMGAS RKDSNTAQQF IGQQIKEYEK
LLRTAEQRLM DFKREHVGMM PNEKGDYYQR LQTAVENLRT ARTELNMAIG RRDVLKRQLR
GEEPVFGFGT GGTGTSSKDS SPAGMRIQSL QAELDEVLLK YTDKHPKVSA IKETIAMLQK
REEQQFSLPQ KQQGEGEEAN EAGEYAVGGN FYYQQMQISL AEAEANIASQ EAEVSALEKD
VERLHELVDT IPKVEAELAQ LNRDYGVYKS NYQQLLTRLE SAKMGERVEE SPDNVKFKIV
EPPIQPLLPS GPDRPLLLTL VLVVAGGAGG ALAFFLSQLR PVFYTRRDLE EATGLPVLGP
VSMILSGRIL WKHRLNLAFL LTFLGLLIAG YGLLVSNYLF GIKMFDTIKH SLF
|
|---|
| |