Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_1870 |
Symbol | |
ID | 3705444 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 2126631 |
End bp | 2127305 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637738349 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_343866 |
Protein GI | 77165341 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTTAG CTAAGGCAGT GATTACCATT GAGCACACGG GTGAAGAAAT CCCGGTGATG TTCAATCCCG AGGAGTATAC CTTAAACAAA GATAACAATT TTGCTTCGCA AACGATTCCT GGACTGCGCT CTCCGCTTTT GCAGTTTGTC AATGGCAACT TGCGCACACT GGAGATGGAG CTATTGTTTG ACACCTATCT ACCTCATACT ACTGAGCCTA AACCACCCAG TGATGTGCGC GAAGAAACGC AAAAAATTGT GAAGTTGCTT GATATCGATT CGAATTTGCA TGCCCCACCA GTATTAACTA TTTCTTGGGC TTCGCTACAG TTTCGCTGCG TGCTAGCCCG GGTTAGCCAG CGATTTATTA TGTTTCTGCC GGATGGCCGG CCGGTGCGCG CCCGGCTAAC AGTAACTTTC AATGAATTCA TTGATGTCGA GCGAGAAGCG AAGGAAGTAA ACCTGCAAAC GGCCGATTTC ACCAAAGTGC ATGTGGTGGT TCGAGGTGAA ACCTTGAGTG GCATTGCAGG ACAATTTTAT GAAGATCCGC AGCTTTGGCG TCCTATCGCC ATCGCCAACG GCATCGCCGA TCCTCGGGCC ATTGTGGTGG GGCAGTCGTT GCAAATTCCA TCGTTACCCT TCATCGATCC GGACACCAGG GAGGTCGTGG TCTGA
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Protein sequence | MALAKAVITI EHTGEEIPVM FNPEEYTLNK DNNFASQTIP GLRSPLLQFV NGNLRTLEME LLFDTYLPHT TEPKPPSDVR EETQKIVKLL DIDSNLHAPP VLTISWASLQ FRCVLARVSQ RFIMFLPDGR PVRARLTVTF NEFIDVEREA KEVNLQTADF TKVHVVVRGE TLSGIAGQFY EDPQLWRPIA IANGIADPRA IVVGQSLQIP SLPFIDPDTR EVVV
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