Gene Noc_1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1870 
Symbol 
ID3705444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp2126631 
End bp2127305 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content50% 
IMG OID637738349 
Productpeptidoglycan-binding LysM 
Protein accessionYP_343866 
Protein GI77165341 
COG category[S] Function unknown 
COG ID[COG1652] Uncharacterized protein containing LysM domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTTTAG CTAAGGCAGT GATTACCATT GAGCACACGG GTGAAGAAAT CCCGGTGATG 
TTCAATCCCG AGGAGTATAC CTTAAACAAA GATAACAATT TTGCTTCGCA AACGATTCCT
GGACTGCGCT CTCCGCTTTT GCAGTTTGTC AATGGCAACT TGCGCACACT GGAGATGGAG
CTATTGTTTG ACACCTATCT ACCTCATACT ACTGAGCCTA AACCACCCAG TGATGTGCGC
GAAGAAACGC AAAAAATTGT GAAGTTGCTT GATATCGATT CGAATTTGCA TGCCCCACCA
GTATTAACTA TTTCTTGGGC TTCGCTACAG TTTCGCTGCG TGCTAGCCCG GGTTAGCCAG
CGATTTATTA TGTTTCTGCC GGATGGCCGG CCGGTGCGCG CCCGGCTAAC AGTAACTTTC
AATGAATTCA TTGATGTCGA GCGAGAAGCG AAGGAAGTAA ACCTGCAAAC GGCCGATTTC
ACCAAAGTGC ATGTGGTGGT TCGAGGTGAA ACCTTGAGTG GCATTGCAGG ACAATTTTAT
GAAGATCCGC AGCTTTGGCG TCCTATCGCC ATCGCCAACG GCATCGCCGA TCCTCGGGCC
ATTGTGGTGG GGCAGTCGTT GCAAATTCCA TCGTTACCCT TCATCGATCC GGACACCAGG
GAGGTCGTGG TCTGA
 
Protein sequence
MALAKAVITI EHTGEEIPVM FNPEEYTLNK DNNFASQTIP GLRSPLLQFV NGNLRTLEME 
LLFDTYLPHT TEPKPPSDVR EETQKIVKLL DIDSNLHAPP VLTISWASLQ FRCVLARVSQ
RFIMFLPDGR PVRARLTVTF NEFIDVEREA KEVNLQTADF TKVHVVVRGE TLSGIAGQFY
EDPQLWRPIA IANGIADPRA IVVGQSLQIP SLPFIDPDTR EVVV