| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1827 |
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| Symbol | |
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| ID | 3705267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 2073167 |
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| End bp | 2076382 |
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| Gene Length | 3216 bp |
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| Protein Length | 1071 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637738308 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_343825 |
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| Protein GI | 77165300 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0746968 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTG CCCGTTTTTT CACGGATCAT CCGGTATTCG CGTCGGTACT ATCGATCCTA
ATTATTATTA TCGGCAGTCT TGCTATCCTG ACTCTTCCTA TTGAACGCCA TCCCCAGATT
GCCCCGCCGA CAGTCGTCGT AAGCACCACT TATCCTGGCG CCAGTGGAGA AACGGTGGCT
AAAACCGTCG CCACTCCCCT TGAGCAGGAA ATCAACGGCG TTGAGGACAT GCTGTATATG
TCTTCCCAGG CAACTAACGA TGGGGCGCTT CGGCTCACCA TTACCTTTGA ATTGGGCACT
GATCTAGATA AGGCTCAGGT GCTGGTGCAA AACCGGGTGG CGTTGGCGGA GCCTCGGCTG
CCGGAAGAGG TCCGCCGGAT GGGGATCTCG GTGCGTAAGA GCTCGCCTGA TTTGAGTTTG
GTTGTCAATA TTATTTCGCC GGATCAACGC TATGATCAAA TCTACCTCAG TAATTATGCC
CTTATCCATG TTCGCGAGGC CCTGGCGCGG TTGCCGGGGG TAGGAGATAT CGCCCTGTTT
GGAGGTCGTG ATTACAGTAT GCGGGTCTGG CTGGATCCGG AGAGTCTTGC TTCCCGTGAA
CTGACAGCAA TGGATGTGGT GCGCGCCATT CGGGAGCAGA ATGTGCAGGT TGCTGCAGGT
ACTTTAGGCG AACCCCCCAT CCCTGGTAGC ACCGATCTGC AACTGACTGT TAATACCATG
GGGCGGCTTA CCGAGGCCGA GCAGTTTGGC AAGATCATTG TTAAAACCGG CACTGAGGGG
CAAGTGACCT ATGTTCGTGA TATCGCGCGT ATTGAACTGG GCGCCGCAAG CTATGCTTCT
AACCTCTATC TCGGCAGTCA ACCTACCGTT GGAATCATCA TTTTTCAGCG GCCGGGCAGC
AATGCCCTGG AGACCAAGCA GGCTGTGATG GAAACCATGG AACGGTTAGC CAAGGATTTC
CCTCCCGGAA TCGCCTACCG TGTGGTCTAT GACACCACCA CTTTTATTGA AGAATCGGTG
AAATCGGTGG TCAAAGTACT GTTTGAAGCA GTGCTCATCG TGTTGGTGGT GGTGCTGGTG
TTTCTGCAAA ATTGGCGTGC GACCTTAATT CCCATGCTGG CGGTTCCTGT CTCTCTGATT
GGCACCTTTG CGGTATTGGC GGCCTTGGGG TTCTCCCTCA ATACCCTGAC GCTAGCGGCG
ATGGTACTGG CCATTGGCAT TGTCGTGGAT GACGCCATTG TGGTGGTGGA AAACGTGGAG
CGTAACCTGG AGGCGGGCCT GCCGCGCCGG GAAGCTACCC TCAAGGCCAT GGGGGAGGTG
TCGGGAGCGA TCATTGCCAT GGCTTTGGTG CTAGGGGCGG TGTTTATCCC CACTGCTTTC
ATCTCGGGGG TGACGGGGCA ATTTTATCAG CAATTTGCGC TGACTATCGC TGCCGCTACT
ATTATTTCGG CCATTAACTC GTTAACTTTG AGTCCGGCTC TAAGCGCTAT TTTTTTGAAG
TCTCCGGATG AAAAGAAGGA TTTTTTACAG CGTTGGCTTG ATCGGCTTTT TGGCTGGTTT
TTTAAGGGAT TTAATTGGGT TTTTGGCTGG TTTTGGACTA AATATACACT GCTTATTCGC
CGCCTCGTGC GGATGAGCGT GCTGATGCTA GGAATCTACG GCGGGTTGCT AGGGCTCACC
TACCTGGGGT TTACCCAAGT GCCGACCGGT TTTATTCCCC AGGAAGATCA GGGCTATTTG
ATTGTCTTTG CCCAGCTTCC GGACGCAGCT TCCCTGGAGC GCACCGATGC GGTGCTTCGT
CGGGCCAACG AAATTATTCT CGATACGAAG GGTATATTGA GTACCAATGC GGTGGCGGGA
TGGTCAGTGA TCATGCGCGG GAATCAGCCT AATGTGGGCA CTATTTTCGT CATTCTAGAT
CCTTTCTCCG AGCGCACAGA GGAAAACTTG GGTGCTAACG CTATTGCCGA AACGCTCCAG
CAGCGGCTCG GCGAAATCCA GGAAGCCTTT ATCGGGGTCT TTCCTCCTCC CTCGGTGCGG
GGTATCGGTA ACCTCGGCGG ATTTAAGATG GAGATCCAGG ATCAAGGAGG ACGTGGGTTG
CATGCTCTGC AAGATGCGGT GGAACAGGTG ATTATCACGG GAAATCAAAC CCCTGAATTG
AGTGGATTAT TTACCACCTT CCGAGCCAAT GTTCCCCAGA TTTATTTGGA TATTGACCGT
ACCCAAGCGC GCTCCATGGG GGTGCCCCTT AGTAATGTTT TCGATACCCT GCAAGTTTAT
CTGGGCTCCC TCTATGTCAA TGATTTTAAT CTTTTTGGCC GTACTTTTCG GGTTGTAGCC
CAGGCGGATG GAGCGTTTCG CGACCAGCCT GAAGATATCT ATCTGCTGAA AACCCGTAAC
GTGAGTGGTG AGATGGTGCC CCTTGGCGCC TTAGTGGATA TTCAAGAAAC TACGGGTCCT
GATAAAGTCA ATCGTTACAA CCTATTTCCT GCCGCAGAGG TAAATGGCGA TGCGATGCCT
GGAATTAGTT CAGGACAGGC TATTTCTTTG ATGGAAGCCA TTGCCGAGCG TGAATTACCC
CGGGGATTTG GTTTTGAATG GACGGAACTG ACTTATCAGC AAATCCTGGC GGGCAATACC
GCCGTTTATA TCTTCCCCCT CTGTGTGCTG TTCGTTTTTC TCGTGCTCGC TGCCCAGTAT
GAAAGCTGGT CGTTGCCGTT GGCGGTGATC CTGATTGTGC CCATGTGTCT GCTGTCTGCC
ATTATGGGGA TCTGGTTCAT GGGTATGGAT AATAATATTT TTACCCAAAT CGGTTTTATC
GTGCTTATCG GGCTGGCGAG TAAAAATGCG ATCCTAATCG TTGAGTTTGC CAAGCAATTA
CAGGATAAAC AGGGTTTGAA CCGGTATAAG GCCGCAGTAG AATCCTCCAG GTTGCGCTTG
CGCCCCATCC TCATGACCTC TTTTGCTTTT GTTTTTGGGG TATTGCCCCT GGTGATCGCC
GAGGGGGCTG GAGCGGAAAG CCGGGAACTC CTTGGAGTGG CCGTTTTAAG TGGTATGCTT
GGGGTCACCT TTTTTGGCCT TGTGTTCACA CCCATTTTCT ATGTTGTGGT TCGCACATTT
GTAGAGCGCC GCCAGGTGCG GGTGCGAGCC GAGATGCCTA AGCCAGTTCA TAAAGAGGGG
GATATTGAGC CGCTAACCCC TGGTAACTCA GATTAA
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| Protein sequence | MNFARFFTDH PVFASVLSIL IIIIGSLAIL TLPIERHPQI APPTVVVSTT YPGASGETVA
KTVATPLEQE INGVEDMLYM SSQATNDGAL RLTITFELGT DLDKAQVLVQ NRVALAEPRL
PEEVRRMGIS VRKSSPDLSL VVNIISPDQR YDQIYLSNYA LIHVREALAR LPGVGDIALF
GGRDYSMRVW LDPESLASRE LTAMDVVRAI REQNVQVAAG TLGEPPIPGS TDLQLTVNTM
GRLTEAEQFG KIIVKTGTEG QVTYVRDIAR IELGAASYAS NLYLGSQPTV GIIIFQRPGS
NALETKQAVM ETMERLAKDF PPGIAYRVVY DTTTFIEESV KSVVKVLFEA VLIVLVVVLV
FLQNWRATLI PMLAVPVSLI GTFAVLAALG FSLNTLTLAA MVLAIGIVVD DAIVVVENVE
RNLEAGLPRR EATLKAMGEV SGAIIAMALV LGAVFIPTAF ISGVTGQFYQ QFALTIAAAT
IISAINSLTL SPALSAIFLK SPDEKKDFLQ RWLDRLFGWF FKGFNWVFGW FWTKYTLLIR
RLVRMSVLML GIYGGLLGLT YLGFTQVPTG FIPQEDQGYL IVFAQLPDAA SLERTDAVLR
RANEIILDTK GILSTNAVAG WSVIMRGNQP NVGTIFVILD PFSERTEENL GANAIAETLQ
QRLGEIQEAF IGVFPPPSVR GIGNLGGFKM EIQDQGGRGL HALQDAVEQV IITGNQTPEL
SGLFTTFRAN VPQIYLDIDR TQARSMGVPL SNVFDTLQVY LGSLYVNDFN LFGRTFRVVA
QADGAFRDQP EDIYLLKTRN VSGEMVPLGA LVDIQETTGP DKVNRYNLFP AAEVNGDAMP
GISSGQAISL MEAIAERELP RGFGFEWTEL TYQQILAGNT AVYIFPLCVL FVFLVLAAQY
ESWSLPLAVI LIVPMCLLSA IMGIWFMGMD NNIFTQIGFI VLIGLASKNA ILIVEFAKQL
QDKQGLNRYK AAVESSRLRL RPILMTSFAF VFGVLPLVIA EGAGAESREL LGVAVLSGML
GVTFFGLVFT PIFYVVVRTF VERRQVRVRA EMPKPVHKEG DIEPLTPGNS D
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