| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1818 |
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| Symbol | |
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| ID | 3705258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 2060206 |
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| End bp | 2061981 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637738301 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_343818 |
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| Protein GI | 77165293 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00373836 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCCGC GAAAAGAGCC CTCGGATCTG CGAAGAGCGT TTGAGGTTTG CAAGGGATCC
TTTTTTTCGG TGGGTTTTTT CAGTCTGTTC ATTAACCTGC TCATGTTAGT GCCGCCCCTT
TACATGCTCC AGGTCTATGA CCGCGTCATT GTTACCCGCA GCGAAGAAAC TTTGCTAGTA
CTGACCCTGG TGGTGATCTT TCTATTCTCT ATTCTGGGCG GACTGGAGTT GGTGCGTTCG
CGAATTCTCA TTCGTATGGG CAATCGTCTG GATATCTTGA TCAGCGGGCG GCTCTATCGC
GCCATGTTCC AGCGTAGTGT GCTGAGCCAG GGGCGGCAGA CGGCCCAACC ACTTAGCGAC
TTGACCCAGC TTCGCCAGTT TCTGAGCGGC TATGGGCTGT TTGCCTTTTT CGATGCTCCC
TGGGCGCCTA TCTACCTGGG AATACTCTAT CTTTTCCATC CTTGGCTGGG GTTTTTTGCT
ACCGGTGCGG CTATTGTTCT GCTGTCCTTG GCCATCGTCA ACGAAAAGAG CACCAAGGCA
CTGCTGGCCT CGGCCAATAA AGACCATATC AAGGCCCAGG AGCTGGCTAA CAGCAATCTG
CGGAACGCAG AGGTGCTCCA TGCCATGGGC ATGTTGCCGG GCCTTATGGG ACGCTGGGCC
GGCAAGCATC ACACCTTCTT GGCCCTGCAG TCCCAAGCCA GTGATCGGGC TGCCACACTG
ACCAATCTCT CCAAGATACT GCGGCTGTTG TTTCAGTCGC TGATTCTCGG TTTGGGGGCA
TGGTTGGTGC TTCAAGATAG CCTGACCCCC GGGATGATGA TTGCCGGCTC GATTCTCATG
GGCCGCGCTT TGGCGCCCAT TGATCAGATG ATGGCCAGTT GGCGAAGCTT CGCTAACTGG
CGTAGCGCCT ATCAGCGTCT CAATGATCTC TTTGAGCAGA CACCCAGGGA ATCCCGCCCC
ATGTCTTTGC CAGCGCCCCA GGGGGAGATT GTATTGGAAA GCGTAACGGC TGCGCCGCCC
GGCGTTCCCA TGGCGACTCT CCGTGGCCTC AATTTTGCCG TGGCCAAGGG GGAGCATATC
GGCATCATTG GCCCTAGTGC CTCTGGCAAG TCAACCTTGG CCCGGGTGCT GTTGGGTATC
TGGCCAGCGC AGGTTGGCAA GGTGCGTCTC GATGGGGCTG ACATTGCCCA GTGGAACCGG
GATGAACTGG GTCCCTTTAT CGGCTACTTG CCCCAGGATA TCGAGCTGTT CGACGGTACT
ATCAGCGAAA ATATTGCCCG CTTTGGTGAG GTTGACTCGG GCAAGGTGGT GACCGCGGCC
AAAAAGGCCG GCATACATAC CATGATTCTT AAACTGCCCA ATGGCTATGA TACCTATATT
AGCGCTTCTG GCGGGGCGCT CTCCGGGGGC CAGCGCCAGC GGGTGGGTTT GGCGCGCGCG
CTTTACGGCA ACCCTGTTTT GGTCGTTCTC GATGAGCCCA ACTCAAACCT TGATGATACT
GGCGAGCGCG CCCTGGGGCG GGCTCTCACG GAGCTTAAGG TCGAGGGGGT CACGTTATTT
GTGATCAGCC ACCGTCAGAG CATTCTTAGA CAGGTGGATA AGTTGCTAAT GCTCCGGGAG
GGGCAGTTGG GCATGTTTGG TCCCCGGGAT CGAGTGCTAG CCCAGCTCGC CAAGGCCAAC
CTGGCGAAAG GCGGAAAGCC CACGGTCAGC CATTTAGCAG CCATTCAGGG CAGAAGTATA
AGCAACGCGG ATTCCTCGTC CCAGGAACAG GATTAA
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| Protein sequence | MAPRKEPSDL RRAFEVCKGS FFSVGFFSLF INLLMLVPPL YMLQVYDRVI VTRSEETLLV
LTLVVIFLFS ILGGLELVRS RILIRMGNRL DILISGRLYR AMFQRSVLSQ GRQTAQPLSD
LTQLRQFLSG YGLFAFFDAP WAPIYLGILY LFHPWLGFFA TGAAIVLLSL AIVNEKSTKA
LLASANKDHI KAQELANSNL RNAEVLHAMG MLPGLMGRWA GKHHTFLALQ SQASDRAATL
TNLSKILRLL FQSLILGLGA WLVLQDSLTP GMMIAGSILM GRALAPIDQM MASWRSFANW
RSAYQRLNDL FEQTPRESRP MSLPAPQGEI VLESVTAAPP GVPMATLRGL NFAVAKGEHI
GIIGPSASGK STLARVLLGI WPAQVGKVRL DGADIAQWNR DELGPFIGYL PQDIELFDGT
ISENIARFGE VDSGKVVTAA KKAGIHTMIL KLPNGYDTYI SASGGALSGG QRQRVGLARA
LYGNPVLVVL DEPNSNLDDT GERALGRALT ELKVEGVTLF VISHRQSILR QVDKLLMLRE
GQLGMFGPRD RVLAQLAKAN LAKGGKPTVS HLAAIQGRSI SNADSSSQEQ D
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