Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_1817 |
Symbol | |
ID | 3705257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 2058831 |
End bp | 2060198 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637738300 |
Product | Type I secretion membrane fusion protein, HlyD |
Protein accession | YP_343817 |
Protein GI | 77165292 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000000964329 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAACA CTCCCTTACC CACGCTTGAT ATTGTTCCCC CCTGGCAAGA GGCAATCACC CCGTCAGCAT CAGACCGGCA AATTCCTATC TCTGACAAAT ACTACCGATG GTTGGGAATG GTCATCCTGC TGCTTGCCTT TGGCGGTTTT GGAGGCTGGG CCCTCACCGC CGATCTTGCC GTTGCCGTGG TTGCTACGGG GGCGGTTTCC GTGGAATCGT TTAAAAAAAC TATCCAGCAT CTTGAGGGGG GAATCGTCGA AGAAATATGG GTTCAAGATG GTGATCATGT GGAAGCTGGC AGTACTTTGC TGATCCTGGA TAAAACCCGG GCGCTCTCTC AACTGCAAAT AGCGCGCATG CAGTACTTGA CCAGCGGAGT CGCCAGGATG CGTTTGTTGG CCGAGCAGCA GGGGGCCGGT TCCATCGAGT TCTCCGAAGC ATTGCGCCAT AGTCATTTTC CCCGCGTTAA AGAAGTTTTG GCTGTCCAGA AGTCCCTGTT CCAGGCCCGT CGTGAAGCGC TTGCGGAAAC GCTCCATGGG TTTGACGAGC AAATTGTGCA GATGGAGGAG CAGATTGACG GTCTGCAATC GATGATCAAG GTGAGCCAAT CCTTGGCGGC TTCACTGAGG GTAGAAGCCA AGGACTTACG CCACTTGTTC AAGGAGGGCT TTGTGAGTAA CCAGCGGCTG CGCGAGCTGG AGCGGAAAAT TCTGCAGATT CAGGGGGAAG TTGCCCAGTA TCATTCGGAG ATCCTGCGTC TGCGGTCTAA GATCAGCGAA AATCAGACTC AGAAGCGGCT CAAGCAGCAA GAATTTCAAA AAGAGGTTGG GGAGCAGTTG CGCCAGGCCC AGGCTAATAT TGCCGAGGCC GAAGAACGCA TGAGCGCACT TAATAAACAA GTCAAACGCA CGACCATCAC CGCGCCCGTT ACTGGCACCG TGGTTGGGAT GACGGTGCAT ACTCTTGGCG CCGTAATTCA CGCTGGCGAT CCCATTATGT TTATTGTGCC TTCAGGAAGC GGTTTCGTGG TCGAAGCGCG CATTCCCGAT CGGGATATCG ATAATATCTA CGCCGGTCAG TATGCGGAGA TTCGCTTCAG TGCTTTTAAT CAACGGTTGA CCGATGTCAT TGAAGGTGAA GTCGTGCATA TCAGCGCCGA CGCCTTTGAG GATGAGATCA CCGGCGGGCG TTACTACAAG GCGCGTATCA AGGTGACGGC GGCAGGTAAG CAGAACATGA GTAGCAATAT ACAACTGCTT GCCGGCATGC CCGCTGAGGT CATGATCAGG ACGGGTGAGC GAACCTTTGC CAGCTATGTA GCCAAACCTA TTGCCGATAT GTTAGCGCGG ACTATACGGG AAGAATAA
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Protein sequence | MENTPLPTLD IVPPWQEAIT PSASDRQIPI SDKYYRWLGM VILLLAFGGF GGWALTADLA VAVVATGAVS VESFKKTIQH LEGGIVEEIW VQDGDHVEAG STLLILDKTR ALSQLQIARM QYLTSGVARM RLLAEQQGAG SIEFSEALRH SHFPRVKEVL AVQKSLFQAR REALAETLHG FDEQIVQMEE QIDGLQSMIK VSQSLAASLR VEAKDLRHLF KEGFVSNQRL RELERKILQI QGEVAQYHSE ILRLRSKISE NQTQKRLKQQ EFQKEVGEQL RQAQANIAEA EERMSALNKQ VKRTTITAPV TGTVVGMTVH TLGAVIHAGD PIMFIVPSGS GFVVEARIPD RDIDNIYAGQ YAEIRFSAFN QRLTDVIEGE VVHISADAFE DEITGGRYYK ARIKVTAAGK QNMSSNIQLL AGMPAEVMIR TGERTFASYV AKPIADMLAR TIREE
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