Gene Noc_1817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1817 
Symbol 
ID3705257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp2058831 
End bp2060198 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content53% 
IMG OID637738300 
ProductType I secretion membrane fusion protein, HlyD 
Protein accessionYP_343817 
Protein GI77165292 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01843] type I secretion membrane fusion protein, HlyD family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000964329 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAACA CTCCCTTACC CACGCTTGAT ATTGTTCCCC CCTGGCAAGA GGCAATCACC 
CCGTCAGCAT CAGACCGGCA AATTCCTATC TCTGACAAAT ACTACCGATG GTTGGGAATG
GTCATCCTGC TGCTTGCCTT TGGCGGTTTT GGAGGCTGGG CCCTCACCGC CGATCTTGCC
GTTGCCGTGG TTGCTACGGG GGCGGTTTCC GTGGAATCGT TTAAAAAAAC TATCCAGCAT
CTTGAGGGGG GAATCGTCGA AGAAATATGG GTTCAAGATG GTGATCATGT GGAAGCTGGC
AGTACTTTGC TGATCCTGGA TAAAACCCGG GCGCTCTCTC AACTGCAAAT AGCGCGCATG
CAGTACTTGA CCAGCGGAGT CGCCAGGATG CGTTTGTTGG CCGAGCAGCA GGGGGCCGGT
TCCATCGAGT TCTCCGAAGC ATTGCGCCAT AGTCATTTTC CCCGCGTTAA AGAAGTTTTG
GCTGTCCAGA AGTCCCTGTT CCAGGCCCGT CGTGAAGCGC TTGCGGAAAC GCTCCATGGG
TTTGACGAGC AAATTGTGCA GATGGAGGAG CAGATTGACG GTCTGCAATC GATGATCAAG
GTGAGCCAAT CCTTGGCGGC TTCACTGAGG GTAGAAGCCA AGGACTTACG CCACTTGTTC
AAGGAGGGCT TTGTGAGTAA CCAGCGGCTG CGCGAGCTGG AGCGGAAAAT TCTGCAGATT
CAGGGGGAAG TTGCCCAGTA TCATTCGGAG ATCCTGCGTC TGCGGTCTAA GATCAGCGAA
AATCAGACTC AGAAGCGGCT CAAGCAGCAA GAATTTCAAA AAGAGGTTGG GGAGCAGTTG
CGCCAGGCCC AGGCTAATAT TGCCGAGGCC GAAGAACGCA TGAGCGCACT TAATAAACAA
GTCAAACGCA CGACCATCAC CGCGCCCGTT ACTGGCACCG TGGTTGGGAT GACGGTGCAT
ACTCTTGGCG CCGTAATTCA CGCTGGCGAT CCCATTATGT TTATTGTGCC TTCAGGAAGC
GGTTTCGTGG TCGAAGCGCG CATTCCCGAT CGGGATATCG ATAATATCTA CGCCGGTCAG
TATGCGGAGA TTCGCTTCAG TGCTTTTAAT CAACGGTTGA CCGATGTCAT TGAAGGTGAA
GTCGTGCATA TCAGCGCCGA CGCCTTTGAG GATGAGATCA CCGGCGGGCG TTACTACAAG
GCGCGTATCA AGGTGACGGC GGCAGGTAAG CAGAACATGA GTAGCAATAT ACAACTGCTT
GCCGGCATGC CCGCTGAGGT CATGATCAGG ACGGGTGAGC GAACCTTTGC CAGCTATGTA
GCCAAACCTA TTGCCGATAT GTTAGCGCGG ACTATACGGG AAGAATAA
 
Protein sequence
MENTPLPTLD IVPPWQEAIT PSASDRQIPI SDKYYRWLGM VILLLAFGGF GGWALTADLA 
VAVVATGAVS VESFKKTIQH LEGGIVEEIW VQDGDHVEAG STLLILDKTR ALSQLQIARM
QYLTSGVARM RLLAEQQGAG SIEFSEALRH SHFPRVKEVL AVQKSLFQAR REALAETLHG
FDEQIVQMEE QIDGLQSMIK VSQSLAASLR VEAKDLRHLF KEGFVSNQRL RELERKILQI
QGEVAQYHSE ILRLRSKISE NQTQKRLKQQ EFQKEVGEQL RQAQANIAEA EERMSALNKQ
VKRTTITAPV TGTVVGMTVH TLGAVIHAGD PIMFIVPSGS GFVVEARIPD RDIDNIYAGQ
YAEIRFSAFN QRLTDVIEGE VVHISADAFE DEITGGRYYK ARIKVTAAGK QNMSSNIQLL
AGMPAEVMIR TGERTFASYV AKPIADMLAR TIREE