| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1642 |
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| Symbol | |
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| ID | 3705670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 1833219 |
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| End bp | 1836695 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637738115 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_343644 |
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| Protein GI | 77165119 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACCTG CTTTAAATCT CGCCTCTCTA GCACCAGTCT TACCCCGACA GGCTGGTGAC
CATCATCGTT TTGGTCAACT TTACGGAAGC AGTTTTGGTC TGGTATTAGC GGCCTCCGCC
TATTATCATC CGGGCCCTAT TTTGGTCATA ACACCAGATA CGATTACGGC AAACCGGTTG
GAAGATGAGC TCCGCTTTTA TCGCAACGGC CAGGAAGATA GCCCCATCCT CCATTTTCCT
GATTGGGAAA CTTTACCCTA TGACACTTTT TCTCCCCATC AGGATATCCT CTCCGAACGG
CTTGCCACCC TTTACCAATT ACCTCGCTTA GAGCGTGGTA TATTGATCGT TCCAGTCTCC
ACCTTAATGC AGCGGCTGGC GCCCCAAGAA TATCTAGAAA CCCATAGTTT ACTGGTGGCA
ACTGGCGATC ACCTTCACCT GGAGAATTGG CGCAAGCAAC TAGAAAAGGG AGGATATCGT
TGTGTCTCCC AGGTAATGGA GCACGGCGAA TTCGCCATTC GGGGTTCCCT CATCGACCTG
TTCCCCATGG GCAGCACGCT GCCTTATCGA ATCGATCTCT TTGATAATGA AGTGGATAGT
CTCCGCAGCT TCGATCCGGA AACCCAGCGC TCTCTGCAAT CGGTAGCACA GATCCAACTG
CTACCTGCCC GGGAATTTCC CCTGGTAGAA GAAACGATTA CCCGATTCCG AAAGAACTAT
CGGGGCGCCT TTAACGGTGA TCCTCAGCGC AGCTTGATTT ACCGAGAGGT AAGCGAAGGA
CATCCTTTTC CAGGAATAGA ATATTACCTG TCGCTTTTTT TCGACCACAC TGATACCCTA
TTCGACTATC TCCCTAACAA TACGCTGGCT GTCACTGTGG AAGGAGTCAA CACCACTGCT
GAGAGTTTTT GGAGAGAGAT TAATGCTCGC TACGAGCAAT ATCGCCACGA TATAGAGCGC
CCTCTTCTAC CCCCCCCAAA ACTCTATCTG CAAGCCGGAG AGGTCTTTTC CTCCCTTAAA
CACCTACCTC GAATCAGTCT ACAATCCTCA AAAGTAGAGG AAAAAGCCGG TTATCAAAAT
TTTTCTACTG AGGCGCCGCC CTCGCTTATG CTCAATGCCC GTATTTCCCA GCCGCTGAAA
ACTCTCAACC AATTTATAAA AAGCTTTACG GGGCGGGTCT TATTTGCCGC CGAAACCGCA
GGACGCCGGG AAACTTTGCG AGATTTATTC AAAGACAGTG GAATTCGGCC CCATTTCTTT
GAAAACTGGG AGACTTTTCT GCAAGCTGAG GAACGTCTTG GTATTACCGT TGCGCCTCTA
CAGCATGGCT TGCTGCTCAG CGAGCCACGG ACCGCCGTGG TCGCGGAGTC TCAATTATTT
GGCCAACAAG CCATGCAGTA CCGCCGTCGT AAGGAGCGTA CCCGTGATGC GGATGCGGTA
GTTCGGGATT TAGTAGAACT CTCCATCGGC GCCCCAGTGG TCCATGAGGA ACATGGTGTG
GGCCGCTACT TAGGACTGCA GACCCTAGAA GTTGGGAAAG TCCGCACCGA ATTTATGGCG
TTGGAATACG CAGGAGGAGA TAAGCTCTAT GTCCCCGTCT CTTCTCTCCA CCTGATTAAC
CGCTATACTG GCGCCACTCC CGAGGCGGCG CCCCTGCATA AACTCGGTTC CAACCATTGG
GAACGAGCCA AGCGTAAGGC CCGGGAACGA GTCCGAGATG TAGCCGCCGA ACTGCTAGCT
ATCTATGCTC AGCGGGCGGC TCGAAAAAAA CTGCCCCTGC CTACCCCAGA TTCTCACTAT
ACCGCCTTTG CTCGCGCCTT CCCCTTTGAG GAAACCCCGG ACCAAGCGGA TGCTATCCAA
GCGGTGATTG CCGATTTGAC TTCAGATCAA CCCATGGATC GCCTCGTCTG TGGAGATGTG
GGTTTTGGTA AAACTGAAGT GGCGATGCGG GCGACCTTCA TTGTCTCACA AGCAGGCAAG
CAGGTGGCAG TACTGGTGCC TACCACGCTC CTGGCCCAGC AACATTATCA AAGCTTTAAA
GACCGGTTTG CCGATTGGCC AGCGCGGGTA GAAGTTATAT CCCGGTTCCG TTCCCGCAAA
GAACAAGAAG CAGTGATCAG TGGTATTGCT GATGGCCGAG CAGATATTGT GATTGGCACC
CATAAATTGC TGCAGGAAAA TATCCGTTTT AAGAATCTAG GATTGGTAAT TATCGATGAA
GAACACCGCT TTGGAGTCCG ACAGAAGGAA CGGATGAAGG CTCTACGAAC CGAGGTGGAT
ATTCTCACCC TAACTGCAAC CCCCATTCCC CGAACCCTCC ATATGTCTCT GTCCAATCTC
AGGGATCTCT CCATCATTGC CACGCCACCG GCGCGGCGTC TAGCTATTAA AACTTTTGTG
CGGCAATGGA ATGACAATCT TCTCCGGGAA GCATTATTGC GGGAAATCAA GCGAGGGGGA
CAAGTCTATT TTCTTCATAA TGAAGTAGAA AGCATTAATA AAATGGCCCA GCGAGTTCAA
ACCCTTTTTC CTGAAGCCAA AGTGGGCATT GCCCATGGTC AGATGCGGGA GCGGGAGCTA
GAACAGGTGA TGCTAAATTT CTATCACCGA CGTTTTAATG TCCTGATTTG CACTACTATT
ATTGAAACTG GGATTGATAT TCCTAGCGCC AATACTATCA TTATCCATCG GGCCGATAAA
TTGGGCTTAG CCCAATTATA TCAACTCCGG GGACGAGTGG GACGCTCTCA CCACCGAGCC
TATGCCTATC TGATTGTCCC TCCTCGCTCG GTCATGACCG CAGATGCGAT CAAACGCCTA
GATGCCATTG AGTCCCTGGA AGAACTAGGT GCTGGTTTTA CCTTAGCTAG CCATGATATG
GAAATCCGGG GGGCGGGTGA ACTACTGGGT AAAGACCAAA GCGGGCAAAT GCAAGAAATC
GGCTTTGATC TTTACCATGA TCTGCTAGAA CGGGCAGTCA ATAGCTTAAA GTCCGGGCAA
GCCTTGGATT TAGAGCAACC ACCGGAACAA GGTTCAGAGG TCGACCTCCA TGCTCCCGCC
CTGATCCCAG AAGATTACCT CCCGGATGTG CATACCCGAT TAGTGCTCTA TAAACGGATC
GCCACCGCCA AAAATCACCA AGCACTGACA GAACTTCAGG TAGAGATGAT TGATCGCTTC
GGTCTATTGC CAGAAGCCAC TAAGACTCTA TTTGCTACCC ACGAACTCCG CTTAAAAGCA
AATGAAATCG GTATTCGCAA GATCGAAGCA GGTGCCCATG GCGGTCGGAT TCACTTTCAA
TCGGAACCTA AAGTGGATCC TATGGCCATT ATTGATTTAA TTCAGACACA GCCTAGCGTT
TATAAACTCG ATGGCCAGGA AAAGCTGCGC TTTACCCGAA AACTTCCTAC GGTCCAAGCA
CGCTTAGAGA CCCTAGAAAA ATTGCTAAAA ATACTGATCA TGAAAAAAGC AGCCTAG
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| Protein sequence | MPPALNLASL APVLPRQAGD HHRFGQLYGS SFGLVLAASA YYHPGPILVI TPDTITANRL
EDELRFYRNG QEDSPILHFP DWETLPYDTF SPHQDILSER LATLYQLPRL ERGILIVPVS
TLMQRLAPQE YLETHSLLVA TGDHLHLENW RKQLEKGGYR CVSQVMEHGE FAIRGSLIDL
FPMGSTLPYR IDLFDNEVDS LRSFDPETQR SLQSVAQIQL LPAREFPLVE ETITRFRKNY
RGAFNGDPQR SLIYREVSEG HPFPGIEYYL SLFFDHTDTL FDYLPNNTLA VTVEGVNTTA
ESFWREINAR YEQYRHDIER PLLPPPKLYL QAGEVFSSLK HLPRISLQSS KVEEKAGYQN
FSTEAPPSLM LNARISQPLK TLNQFIKSFT GRVLFAAETA GRRETLRDLF KDSGIRPHFF
ENWETFLQAE ERLGITVAPL QHGLLLSEPR TAVVAESQLF GQQAMQYRRR KERTRDADAV
VRDLVELSIG APVVHEEHGV GRYLGLQTLE VGKVRTEFMA LEYAGGDKLY VPVSSLHLIN
RYTGATPEAA PLHKLGSNHW ERAKRKARER VRDVAAELLA IYAQRAARKK LPLPTPDSHY
TAFARAFPFE ETPDQADAIQ AVIADLTSDQ PMDRLVCGDV GFGKTEVAMR ATFIVSQAGK
QVAVLVPTTL LAQQHYQSFK DRFADWPARV EVISRFRSRK EQEAVISGIA DGRADIVIGT
HKLLQENIRF KNLGLVIIDE EHRFGVRQKE RMKALRTEVD ILTLTATPIP RTLHMSLSNL
RDLSIIATPP ARRLAIKTFV RQWNDNLLRE ALLREIKRGG QVYFLHNEVE SINKMAQRVQ
TLFPEAKVGI AHGQMREREL EQVMLNFYHR RFNVLICTTI IETGIDIPSA NTIIIHRADK
LGLAQLYQLR GRVGRSHHRA YAYLIVPPRS VMTADAIKRL DAIESLEELG AGFTLASHDM
EIRGAGELLG KDQSGQMQEI GFDLYHDLLE RAVNSLKSGQ ALDLEQPPEQ GSEVDLHAPA
LIPEDYLPDV HTRLVLYKRI ATAKNHQALT ELQVEMIDRF GLLPEATKTL FATHELRLKA
NEIGIRKIEA GAHGGRIHFQ SEPKVDPMAI IDLIQTQPSV YKLDGQEKLR FTRKLPTVQA
RLETLEKLLK ILIMKKAA
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