| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1623 |
|---|
| Symbol | |
|---|
| ID | 3705687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 1813161 |
|---|
| End bp | 1814573 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637738098 |
|---|
| Product | two component, sigma-54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_343627 |
|---|
| Protein GI | 77165102 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.46747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGCCA CACTACTGAT TATCGAGGAC GAAATACTTT TAGGCACTGA ACTTTCACGC
CATTATCAAA GTGGAGGGTG GGAGGTAGAG TGGGCCACAA CTTTATCACA AGCACGCTCC
ATACTTTTGG AGCAACACTT TGATCCGCTC CTCGTTCTTT CGGATATGAG CCTACCAGAT
GGTAACGCCC TGGATCTGAT AGAGGCCGTC CAAGGGCAAC ACCCCCATGC CGAATGGCTT
CTTCTCACTG GCTATGGCAG CGTCCCTGAT TCAGTGCGGG CCCTGCGGCT CGGCGCTTAT
GATTTTCTCG AAAAACCCTG TGAGCTAGAG CACCTGGATT TAGTAATAGC TAGCGCCGCC
CGCAGTGCCC GCGCCCAACG ACGCTTATTT TATCAAGTCC AGCAACACCA TCGCCAATAC
TCTCCCCAAG CCTTTGTGGG CCGTAGCCAA TCTGCCCAAG AAGTGCGTAA ATTACTTGCT
AAGCTAACTG AAGTGCCCTT TAGCGCCCTT ATCATTGGCG GTGAAACAGG AACGGGCAAA
GGCTTGGCAG CCCGAATCTT GCACTATGGA GGGGAGCGGG CCCAACATCC CATGGTGGAA
CTCAACTGTG CCGCACTACC TCGGGAGTTG CTAGAATCGG AGCTTTTCGG GCATGAAGCG
GGCGCTTTTA CGGGGGCTAA AGCCCGCCAT CCTGGCCTAA TTGAGCAAGC TAATGGAGGT
ACTTTATTTC TGGATGAAAT TGGCGAAATG CCTCTGGATC TGCAAGCTAA GTTGCTCAAA
ACTATTGAAG ATCGATGGGT ACGCCGCCTC GGTGGCAGCA AGGAAATCCC CGTTGATATA
CAAATTCTGG CGGCCAGCAA CCGTGATTTA GAAGAAATGG CCAAGCATGG AGATTTTCGC
AGCGATCTCT ATCATCGCCT TAGCGTCTTT CGTCTCAATT TGCCGGCATT GCGGGAAATT
AAAGAGGATT TAGAGGAACT CGTGCCCCTA TTTGTAGCCG AATTCAATGC TGAAGCAGGC
AGACAGGTCA AAATTATTCC GGAGAGAGTG TGGACTCGAC TTCATGCCCA CGATTGGCCC
GGCAATGTGC GTGAATTGCG CAATGTGGTG GAACGGTGTG TGCTGTTTTC CGAAGACGCT
GTTTTCCCTG AGCAATGGCT CCAACTGCCA GGACAAGCTA ATTCTCCAGT TGGCTCCTCG
CCCGCAGCCA GTCCTGATCA GGTTTTCCTC CCCTTAGATG GCAGCATGGT CCTTGAAGAG
ATGGACCGCT ACATTATCGA AACCGTGCTT AGGCGCAATG ATTACAACAT TGCCGCAGCT
GCCCGTGCAT TAGGAACCAC CCGGGAAACT TTACGTTACC GTATCCAAAA ACATGGCCTC
AAATCTTCTA AACTATCATC TTCACGAGGT TAA
|
|---|
| Protein sequence | MRATLLIIED EILLGTELSR HYQSGGWEVE WATTLSQARS ILLEQHFDPL LVLSDMSLPD
GNALDLIEAV QGQHPHAEWL LLTGYGSVPD SVRALRLGAY DFLEKPCELE HLDLVIASAA
RSARAQRRLF YQVQQHHRQY SPQAFVGRSQ SAQEVRKLLA KLTEVPFSAL IIGGETGTGK
GLAARILHYG GERAQHPMVE LNCAALPREL LESELFGHEA GAFTGAKARH PGLIEQANGG
TLFLDEIGEM PLDLQAKLLK TIEDRWVRRL GGSKEIPVDI QILAASNRDL EEMAKHGDFR
SDLYHRLSVF RLNLPALREI KEDLEELVPL FVAEFNAEAG RQVKIIPERV WTRLHAHDWP
GNVRELRNVV ERCVLFSEDA VFPEQWLQLP GQANSPVGSS PAASPDQVFL PLDGSMVLEE
MDRYIIETVL RRNDYNIAAA ARALGTTRET LRYRIQKHGL KSSKLSSSRG
|
|---|
| |