Gene Noc_1543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1543 
Symbol 
ID3705801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand- 
Start bp1713400 
End bp1714107 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content53% 
IMG OID637738028 
Producthypothetical protein 
Protein accessionYP_343557 
Protein GI77165032 
COG category[S] Function unknown 
COG ID[COG2340] Uncharacterized protein with SCP/PR1 domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGCTCA GCCTCGGCAA GAGAAAGGCT CAGCCTCGGC AAGAGAAAAG TTCTCCCCAC 
CTAACCAAAG CAGCGAAAGG AATCATCAAC CGCACGAACA CCTTCCGCCA GGAGAAAGGC 
CGCCAAAAGT TGACAGTCAG CCCCAAGCTT AAGGAAGCCT CCCGGTATTT CGCGGAATTT 
ATGGCCCGCA CTGACCAGTA TGGTCACAAT GCGGATGGCA ACCAACCGGC GGAACGTGCG 
AGTAGATACG GTTATCGATA TTGCATCGTT TCCGAGAATA TCGCCTTTCA ATTCGATACG 
GCAGGCTTCA CCACCGAGGA ATTAATCCAA GGTTTTTTCC AAGGATGGAA GTCCTCGCCA 
GGACACCGCA AGAACATGCT CGATCCAGGG GTGACGGAAG TTGGGGTGGC GGTAGCGCGA 
AGTAAACAGA GTGGCTACTA TTACGCAGTG CAAATGTTTG GCCGCCCAAA ATCCCTGCGC 
ATCGAATTTC AGGTCGTCAA TAACACGGCT ACCGCCATTC AGTATGAACT CGGCAGCCAG 
CTGTTCCCCC TTCCGCCGCG GGCCATCCGA ACCCACCAGC TGTGCCGCTC AGAAAATTTG 
CGCTTTCATT GGCCAGACCA GCAAGAAAAT ACCTTTGTAC AGCCCAATAA CGGGAATCGT 
TATACCATCA GGCGGGAAGG GCAAAAATTC CGGGTCAGAA AAGAATAA
 
Protein sequence
MRLSLGKRKA QPRQEKSSPH LTKAAKGIIN RTNTFRQEKG RQKLTVSPKL KEASRYFAEF 
MARTDQYGHN ADGNQPAERA SRYGYRYCIV SENIAFQFDT AGFTTEELIQ GFFQGWKSSP 
GHRKNMLDPG VTEVGVAVAR SKQSGYYYAV QMFGRPKSLR IEFQVVNNTA TAIQYELGSQ 
LFPLPPRAIR THQLCRSENL RFHWPDQQEN TFVQPNNGNR YTIRREGQKF RVRKE