Gene Noc_1536 details

Gene Information

• Locus tag: Noc_1536
• ID: 3705833
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: -
• Start bp: 1705899
• End bp: 1707776
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637738021
• Product: secretion protein HlyD
• Protein accession: YP_343550
• Protein GI: 77165025
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0845] Membrane-fusion protein
• TIGRFAM ID: [TIGR01730] RND family efflux transporter, MFP subunit

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACCCGAT TCCTCCTTCT CTTTATCGCT GGAGCGGCAT TGCTAGCCCT AGGTATAGTC 
ATCGGATGGC AACTCCCGCC TTCCGCATCG CCCGGCGTGA CCGCACCCAA GCCCACGGGC 
CTTCATCCCA CCTATCGCTC AGGCCCGTTC CGGGTGGGTG TGGCCCTACA ACCGGCCACG 
CCCCAGGTCG GAGAAAACCG GCTCCAAGTG GTACTCGAGG ACCACCAAGG CAATCCTATC 
CGTGATGCCC AAATCCATGC CGTGGCGGAG ATGCCCGCCA TGGGCTCCAT GCCCGCCATG 
CAGGCCCCGG CGGAGATGCA AGCAATCGAA CCAGGCTTGT ACCAGGGTAC CTTTGATCTT 
TCCATGGAAG GCAGTTGGCC ATTAACGCTG CGCATTGCCA AGCCGCCGGT GGGTGAAACG 
CGGCTCGTGT TCGATTTGGC AACCGGGCGC GAAGGGTTAC AGCTGGCTTC CGGCGCACGG 
CCCCTCAAAA CGGCACCTGA AGCGTCCACC GAGGCCGGCG CTCTGCCTTA TGTGGCGGGT 
CCCTATCGAT TCGATGTCGC TTTAAAGCCA AAAAGACCCG TCGTGGGCAA AAATATCGTG 
GTGATTTACC TCCAAAATAA ACAGGGGCAG CCACTCCAGA ATGCCCAAAT TGAGGCGATG 
GCTGCAATGC CAGCGATGGG TTCCATGCCG GCCATGGAGG TACCCGCCGA GATAAAGGAG 
CTCAAACCCG GCATCTATGG CGGATCACTC GAATTACCCA TGGAAGGCAG TTGGCCGTTG 
ACGCTGTGGT TCAATGGGGC CGGTGCTCCG GAACATACGG TAATACTGGA TATGACCACC 
GGCCGCAGGG GGTTGGAGGT AGCCTCCGGT GCTGTTCGTG CCGACGGCAG TGAGGAGTCC 
CTTGAAGCCG CGCCTGCCGG CACAGTGACT TTGGATGCCC GCCGCCGGCA GCTCATCGGG 
GTGGAGACCG CACGGGCGCA AGTCACGGAT CTGGAGCGCA CAATTCGCGC TGTAGGGCAA 
GTAAGCTATG ACGAGACGCG GCTTGGGGAT GTAAGCTTGA AATTCGATGC CTGGGTGGGC 
GAATTGTATG CTGAGTATGT CGGCGCACCG GTGAAAAAAG ACCAGCCCCT GTTTACGGTG 
TATGGCCCGG AACTGCTAGC AGCCCAGCAG GAATACCTTA CGCTCAGACA GCGTAGCGCC 
TCATCCACTC TCCTTGATGC CGCCCGCAAA CGCCTTGAAC TGTGGGACAT GACCAACGGG 
GAGATCGCCG CCTTGGCGCG GCGGGGCGAG TCCCTCGATT ACGTGCCCAT CCACGCGCCG 
CTCGGCGGTA CGGTAGTCAT GAAGAACGTG GTCGAGGGCA CGGCGCGCCA GGCCGGAGAA 
ACGCTCATGC GCATCGCCGA TCTGTCCCGG GTCTGGGTGG AAGCCGAGGT CTACGAGGCG 
GAGTTGCCGC TGGTGCGCGC GGGCATGTCA GCCGAGGTAC ACCTGCCTTA TCTGCCGAAT 
CAGGTTTTTC AAGGCGACAT CGATTACGTT TATCCCTACC TGGATGGGGA TAGCCGCACG 
GGGCGCGTGC GCATTACCCT GGAGAATCCC GACGGCGTGC TCAAGCCCGA AATGTACGCC 
GAGGTGAAGC TCAAGGCCGA TTTAGGTCAA CGGCTTACCG TGCCCGAAGA GGCGGTGATC 
ATCGCCGGCG AGACCCGCAT CGTGTTCGAG GACTTGGGCG GCGGACGGTT GGCGCCGCGC 
CGGGTTGAGA CCGGACAACG CGCGGGCGGG CGGATCGAGA TTCTAAGCGG TCTTGAGCCC 
GGTGATCAGG TGGTGACCTC CGGCAATTTT CTGATCGCAT CCGAAAGCCG GCTCAAGGCG 
GGGATTGAGC AATGGTAA 

 

Protein sequence

MTRFLLLFIA GAALLALGIV IGWQLPPSAS PGVTAPKPTG LHPTYRSGPF RVGVALQPAT 
PQVGENRLQV VLEDHQGNPI RDAQIHAVAE MPAMGSMPAM QAPAEMQAIE PGLYQGTFDL 
SMEGSWPLTL RIAKPPVGET RLVFDLATGR EGLQLASGAR PLKTAPEAST EAGALPYVAG 
PYRFDVALKP KRPVVGKNIV VIYLQNKQGQ PLQNAQIEAM AAMPAMGSMP AMEVPAEIKE 
LKPGIYGGSL ELPMEGSWPL TLWFNGAGAP EHTVILDMTT GRRGLEVASG AVRADGSEES 
LEAAPAGTVT LDARRRQLIG VETARAQVTD LERTIRAVGQ VSYDETRLGD VSLKFDAWVG 
ELYAEYVGAP VKKDQPLFTV YGPELLAAQQ EYLTLRQRSA SSTLLDAARK RLELWDMTNG 
EIAALARRGE SLDYVPIHAP LGGTVVMKNV VEGTARQAGE TLMRIADLSR VWVEAEVYEA 
ELPLVRAGMS AEVHLPYLPN QVFQGDIDYV YPYLDGDSRT GRVRITLENP DGVLKPEMYA 
EVKLKADLGQ RLTVPEEAVI IAGETRIVFE DLGGGRLAPR RVETGQRAGG RIEILSGLEP 
GDQVVTSGNF LIASESRLKA GIEQW