| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1361 |
|---|
| Symbol | |
|---|
| ID | 3706125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 1507325 |
|---|
| End bp | 1508497 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637737856 |
|---|
| Product | pilus retraction protein PilT |
|---|
| Protein accession | YP_343385 |
|---|
| Protein GI | 77164860 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.678263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTA AGGATTACCT AAAAATACTT GTTGCCCACG ATGGCTCAGA TATTTATCTG
AGCGCTGGAG CCCCCCCCTG CGCCAAATTC CACGGTTTGC TGAAACCTCT CGAAAAAACG
AGATTATCTT CCAGCGATAT AAAGAAAATC GCCTACGACA TCATGAGCGA AGAACAAACA
GCCGAGTTTG AACAAAAACC GGAAATGAAC TTGGCTCTTT CCGAATCCGG CATTGGACGC
TTTCGGGTCA ATATTTTCAA ACAGCGCAGT GCAATTTCCA TGGTCATTAG GAATATCAAA
ACTACTATCC CTAACGTAGA TAACCTCGGC CTGCCTCCTA TATTAAAAAA CGTTGTGATG
GATAAGCATG GCCTCATTTT ATTTGTAGGG GCAACCGGTT CTGGTAAATC GACCTCTCTT
GCCGCCCTCA TTGATCATCG CAATAATAGC AGCGCGGGTC ATATCATCAC GATTGAAGAC
CCTATCGAGT ATATACACCA GCATAAAAGA TCCATCGTCA ATCAGCGCGA AGTAGGCGTC
GACACGGAGT CTTACGGAGA TGCGCTTAAA AATACCCTAC GCCAGGCACC GGATGTCATT
CTTATTGGAG AAGTTCGCGA CCGGAATACT ATGGAACATG CCATCGCTTT TGCGGAAACA
GGTCACTTAT GCCTTTCTAC CCTTCATGCT AACAATGCTA ACCAGGCGCT TGACCGAATT
ATCAACTTCT TCCCGGAAGA GCGGCGCCCA CAGCTACTCT TGGATCTCTC TTTAAACCTG
CGCGCTTTTA TTTCCCAGCG TCTGGTTCCC ACCATTGACG GTAAGCGCAC TGCGGCTATT
GAGATTTTAT TGGGGACGCC TCTGGTGCGC GACCTCATCC ACCGGGGTGA AATCCACGCT
ATTAAAGACG TCATGGAAAA ATCGGAGAAT CTCGGTATGC AAACCTTCGA TAGCGCCCTT
TATAAATTAT ATGCGACGGG CCTTATCAGT GTCGAAGAGG CGCTGCGCAA CGCCGATTCC
CCTAATAATC TCCGCCTCAA AATTAACTTA TCAAAAAAAG CAATGGGATC GACAACCGCT
TCCTCCGCAA CGGAAAAAAT ATCCCTGGAT GAGAAACCTA ACAAGGATGA ATTGGGAGGG
CTATCCTTCA GCCTGGTGGA GGAAGAAGAC TAA
|
|---|
| Protein sequence | MEFKDYLKIL VAHDGSDIYL SAGAPPCAKF HGLLKPLEKT RLSSSDIKKI AYDIMSEEQT
AEFEQKPEMN LALSESGIGR FRVNIFKQRS AISMVIRNIK TTIPNVDNLG LPPILKNVVM
DKHGLILFVG ATGSGKSTSL AALIDHRNNS SAGHIITIED PIEYIHQHKR SIVNQREVGV
DTESYGDALK NTLRQAPDVI LIGEVRDRNT MEHAIAFAET GHLCLSTLHA NNANQALDRI
INFFPEERRP QLLLDLSLNL RAFISQRLVP TIDGKRTAAI EILLGTPLVR DLIHRGEIHA
IKDVMEKSEN LGMQTFDSAL YKLYATGLIS VEEALRNADS PNNLRLKINL SKKAMGSTTA
SSATEKISLD EKPNKDELGG LSFSLVEEED
|
|---|
| |