| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1275 |
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| Symbol | |
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| ID | 3706348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 1411795 |
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| End bp | 1413567 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637737776 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_343305 |
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| Protein GI | 77164780 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAGC ACAACACTAT CGGTAAGGGG GCATACCGAA AGAGCCATGC CCGCGTGTTT
GTTCGCCGCG CCCGAAGCGG TTGCGTTTCC CTATTAACGC TCGCTTTGTC TGCTTGCATG
GGAGGTCCCG CCATCGATCT GACGCCCGAC TATCAGCCGG AACAATTTAT TCTCCCCGAC
TCATGGCGCG GGTCGGGGCC ATTTGCTAAA GCGAATCCAT CGGAAGGCGA ACTACGCCCG
GATTGGTGGA AGCTTTATGA TGACCCAGTT TTGAATGAAC TTGAAAAACA GGCGATGGAA
GCCAACCCCG ACCTCCATGC CGCCGCCGAG CGGTTCATCC AGGCTCGCGC CATCATGATG
AAGGTCCGCT CGCGTCTCAT TCCCCAGCTG GGAGTAGGAT TCGGCGCTTC CAACAATAAA
CAGTCGGAAG AGCGGCTATT CCGCGGCCTT GGCGAGCCGG ACCGGGAAAC GACGCTTGAG
TTCGGGGGAC TTGCTTCCTG GGAGCCAGAT TTCTGGTCAA GAATCCGCAA TAGAACCCGC
ATGAAAATCT ACCGCGCCGA GCAACGGGCC GCTGAATATA TACTCGCCCG GCTCAGCCTG
CAAGCAGAAG TTGCAACCAA TTACTACACA TTGCGCAGCC TGGATGGGCA AGCGGCGATC
CTGAGTCAAT CAGTCAACTA CTACAAAGAC TTGCTAGGTG TCGTTGAAGA CCGTTTCAAT
GGCGCTATTT CGCCAAAAAT TGACGTTACC CGTACTCAAT TTCTGTTATT CAGCACCGAG
GCGAGACTAC TTAATATTCA GGCCCAACGA CAAGTCATAG AACATGCGCT CGCCGTGCTC
GTCAACCGGT CGGCGAGCAG CTTTAAAATC GAGCCGCTTG ATGAGTTTCC CATGGCTAAG
TTCCAATTAC CGGTAGAAAT TCCATCGACC TTACTGGAGC GCCGGCCCGA CATCGCCGCC
ATGGAGCGCA AGATGGCCCA AGCGAACCGC ACTATCGGCA TCGCCCGCGC CGCCTTTTAC
CCCCATATCT CTTTCGGGGC CGGCAGCGGA TTTGAAGGAG GTACCGGCCT ATTCGATTTG
GCCAAGAGTT TCTGGTCCTA CGGATTGGAG GTTAGGCTTC CAATTTTCCA AGGTGGACAT
CGCCGCGCCC GATTGCAACA AGCTTGGTCC GTTTATCGCG AAACGGTAGA CGATTACCGT
TCGACGGTGC TCAATGCCTT TCGTGAAGTC GAGAACGGTT TGAGCAGAAC GAATTTAATC
TCCGCCCAAG TCGAAAAACT GATAACCTCG GTCGAAGCCG CCCTTGAAAC ACAAAATCTG
ACCGTCAACC TCTATCAAGG GGGACTGGCG ACCAGTCTTG ATCTTCTGTT CGCGCAAATC
AACACTCTGG ATGCACGCAT CGAGGTAGTT AGGGGTAAAG CCGAGCTGAT GAAATCCTCG
GTTGAGCTCG TCCGGGCCCT TGGCGGAGGC TGGAACCGCG AACAACTGCC TACCGACGAA
CAGATACAAC CCTTCGGCGT TCTTCAATAT AACGACCTTG GCAAGCCCCA ACCCGTTGGG
GGAATCGATG CCCCGACGAG CAATGATGGC AGATATAGTG AGCAGTATGA TGATCTCACT
CAATCCATCC AGGGAATCGC TATACCCGCG GGCAACAGGG GGGAAACCAA GGAACTCATC
ATTCATCCCC CTGGAGAAAT GTCTGTGCCC AAAATGGCCG TACCCCCTGA AGAAATGGAA
ACAACGGACA ATAACAGAGA AGGCAATAAG TAA
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| Protein sequence | MIKHNTIGKG AYRKSHARVF VRRARSGCVS LLTLALSACM GGPAIDLTPD YQPEQFILPD
SWRGSGPFAK ANPSEGELRP DWWKLYDDPV LNELEKQAME ANPDLHAAAE RFIQARAIMM
KVRSRLIPQL GVGFGASNNK QSEERLFRGL GEPDRETTLE FGGLASWEPD FWSRIRNRTR
MKIYRAEQRA AEYILARLSL QAEVATNYYT LRSLDGQAAI LSQSVNYYKD LLGVVEDRFN
GAISPKIDVT RTQFLLFSTE ARLLNIQAQR QVIEHALAVL VNRSASSFKI EPLDEFPMAK
FQLPVEIPST LLERRPDIAA MERKMAQANR TIGIARAAFY PHISFGAGSG FEGGTGLFDL
AKSFWSYGLE VRLPIFQGGH RRARLQQAWS VYRETVDDYR STVLNAFREV ENGLSRTNLI
SAQVEKLITS VEAALETQNL TVNLYQGGLA TSLDLLFAQI NTLDARIEVV RGKAELMKSS
VELVRALGGG WNREQLPTDE QIQPFGVLQY NDLGKPQPVG GIDAPTSNDG RYSEQYDDLT
QSIQGIAIPA GNRGETKELI IHPPGEMSVP KMAVPPEEME TTDNNREGNK
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