Gene Noc_1198 details

Gene Information

• Locus tag: Noc_1198
• Symbol: smpB
• ID: 3706696
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: +
• Start bp: 1305250
• End bp: 1305819
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637737701
• Product: SsrA-binding protein
• Protein accession: YP_343230
• Protein GI: 77164705
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.11518
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAA GTAAAAAGAA ATCGTCCGGT ACTTCAAGTA ATGTCATTGC TTTGAACCGC 
AAGGCGCGCC ATGATTATTT CATTGAAGAG CGCTACGAAG CGGGCCTTGT GCTTGAAGGC 
TGGGAGGTCA AGAGTCTGCG GGCAGGACGA GTACAGTTGA ACGAAGGCTA CTGCCTTCTT 
AAAGGAGGGG AGGTGTGGCT GTTCGGTGTC CACCTCAGTC CTTTGAACAC CGTTTCGACC 
CATATTCATC CGGACCCTTT GCGAACTCGA AAACTGCTAC TTCATGCCAA GGAACTGCGT 
AAGCTTATCG GGGCGGTGGA ACGCAAGGGC TACGCATTGA TTCCCTTGAC TTTATATTGG 
AAAAGAGGGC GCGTAAAATT GGAAATTGCC TTAGCCAAGG GTAAGCAGAA ATATGACAAG 
CGTGCTACTG AAAAAGAAAA GGAATGGACC CGGCAGAAAG AGCGTTTATT AAAAGTCCAT 
AAATTCACAC GAAGGGGACT GCCTGCTTTA GCTGGCAGGG GAATTGGCAT CCTCCGTAAG 
TTTGTTGTTT TCCGACAAAA ATCAATGTAG 

 

Protein sequence

MAKSKKKSSG TSSNVIALNR KARHDYFIEE RYEAGLVLEG WEVKSLRAGR VQLNEGYCLL 
KGGEVWLFGV HLSPLNTVST HIHPDPLRTR KLLLHAKELR KLIGAVERKG YALIPLTLYW 
KRGRVKLEIA LAKGKQKYDK RATEKEKEWT RQKERLLKVH KFTRRGLPAL AGRGIGILRK 
FVVFRQKSM