Gene Noc_1143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1143 
SymbolrplT 
ID3706907 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp1251012 
End bp1251371 
Gene Length360 bp 
Protein Length119 aa 
Translation table11 
GC content55% 
IMG OID637737646 
Product50S ribosomal protein L20 
Protein accessionYP_343177 
Protein GI77164652 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0292] Ribosomal protein L20 
TIGRFAM ID[TIGR01032] ribosomal protein L20 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000341848 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTAGAG TAAAACGAGG AGTAACGGCC CACGCCCGGC ATAAGAAGGT GATTGCTCAG 
GCCAAGGGCT ATCGCGGCCG GCGCAAAAAC GTCTACCGTG TTGCGAACCA GGCGATCACT
CGTGCCAGCC AGTATGCCTA CCGTGACCGG CGCCAACGCA AACGGCAGTT CCGCGCTCTT
TGGATCGTGC GTATTAATGC TGCTGCCCGC GAGTGCGGTC TTTCCTATAG CCGCCTTATC
AGTGGATTGA AACGGGCTGC AATTGAGATT GATCGTAAGG TGCTTGCCGA TCTTGCTGTC
AGAGATAAGG CAGCTTTTAC CACCATCGCC GAGCAAGCTA AAGTTGCGCT ATCGGATTAG
 
Protein sequence
MPRVKRGVTA HARHKKVIAQ AKGYRGRRKN VYRVANQAIT RASQYAYRDR RQRKRQFRAL 
WIVRINAAAR ECGLSYSRLI SGLKRAAIEI DRKVLADLAV RDKAAFTTIA EQAKVALSD