Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_1139 |
Symbol | |
ID | 3706975 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | + |
Start bp | 1245998 |
End bp | 1248061 |
Gene Length | 2064 bp |
Protein Length | 687 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637737641 |
Product | excinuclease ABC subunit B |
Protein accession | YP_343173 |
Protein GI | 77164648 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0652505 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGGATA TATTTCAACT GGTGAGTGAT TATCAGCCGG CAGGGGACCA GCCGGAGGCG ATAGAACGGT TGACGGAAGG TCTAGCGGCG GGGGAAATGT ATCAGACCCT GCTGGGGGTT ACCGGCTCGG GCAAAACCTT CACCATAGCC AATATGATCC AGCAGGTTCA GCGGCCGACT ATTGTCTTGG CGCCTAATAA GACTCTAGCA GCCCAACTCT ATAGCGAGAT GCGGGAATTC TTCCCCCGCA ATGCAGTGGG TTACTTCGTG TCTTATTACG ATTATTATCA GCCAGAGGCC TATGTGCCAG CTTCTGATAC TTATATTGGG AAAGACGCTT CGGTTAACGA TCATATAGAG CAAATGCGGC TTTCCGCGAC TAAGGCATTT CTGGAGCGGC CCGATGCCAT TGTGGTGGCA AGTGTCTCCG CTATCTACGG TCTTGGCGAT AAGGATAGTT ATCTGAATAT GGTACTGCAC CTTATGGTGG GTGATACGGT AGATCATCGG GGAATATTAC GCCGCTTGGC GGAGTTGCAG TATCAGCGTA ACGATAGGGA ACTGTACCGG GGCACCTACC GGGTGCGGGG AGAGATTATT GATATCTACC CTGCCGAATC GGAGCAAGAG GCTATCCGGG TAGAACTTTT TGACGATGAG ATAGAGAGTC TCTCTTATTT TGATCCCTTA ACAGGTGAAA TACTGCACCG AGTTTCCCGC TTGACTATTT ATCCAAAGAC CCACTATGTG ACGCCCCGAG AGGTTCTGTT GCAAGCAGTC GATGAAATTA AGATTGAGCT TGCTGAACGA TTGGAACAGC TTTATGGCGC TAATAAGCTT GTTGAAGCTC AGCGCCTAGA GCAACGGACC CGTTTCGATA TCGAGATGAT ATTAGAGCTA GGTTACTGTA CGGGCATTGA AAATTATTCC CGTTTTCTAT CCCGAAGGCA GCCTGGGGAG GCGCCGCCAA CCCTGTTTGA TTATCTCCCC AAGAATGCTT TGCTGGTTAT TGATGAAAGC CATGTGACGG TGCCCCAATT GGGCGCTATG TACCGGGGCG ATCGGGCCCG TAAAGAGACC TTGGTTGAGT ATGGTTTCCG CCTACCTTCG GCCTTGGATA ACCGGCCCTT AAAATTTGAG GAATGGGAAC AGCTAGCACC CCAGACTATT TTTGTTTCAG CTACGCCTGG ACCCTATGAA CAGCAGCATT CTGGGGCTGT GATTGAACAG GTAGTACGTC CCACGGGTCT GGTTGATCCG GCGGTGGAGG TGAGGCCCGC CGGTAGTCAG GTAGATGATC TGCTCTCGGA GATCCGTCAG CGGACAGCGG CGGATGAGCG GGTGTTGGTG ACGGTCCTTA CCAAGCGTAT GGCGGAGGAT CTGACTCAGT ATCTGGAGCA GCATGAGGTT CGTGTGCGCT ACCTCCATTC GGACATTGAC ACGGTAGAGC GGGTAGAAAT TATCCGCGAT CTGCGGTTAG GTAAGTTTGA TGTGTTGGTG GGAATCAACT TGCTACGGGA GGGATTGGAT ATTCCGGAAG TGTCTTTAGT AGCTATTTTG GATGCGGACA AGGAAGGTTT TCTCCGCTCA GAGCGATCCC TCATTCAAAC GATAGGACGG GCCGCACGCA ATTTACATGG AAGAGCCATT CTTTATGGGG ATAAGGTCAC AGGCTCGATG GGCCGGGCCA TTGCCGAGAC AGAAAGACGG CGGAAAAAAC AGCTTGCTTT TAACGAAACC CATCGTATTA TCCCTCGTGG TATACAAAAA GCGGTGCGGG AAATCATTGA TGGTGTCTAT ACGCCAGGCT CTGGTAAAGG CCACCGCTCC CCTGACCGGG TGGAGGAGAA AGCCGCCGAG TACACTCGCC TGCCACCTCA ACAATTGGCT AAACGCCTAC AACAACTAGA GCGGCAGATG CATAAGCATG CCCAGAATTT AGAGTTTGAA CAAGCCGCCC GGTTGCGCGA TGAAATCAAA AGAATTAAGG GCTGGGTCTT TAACGGAGCC GATTCCGCCT CTGCTCCGAG GCAGGAGAAT TCTCAAGCGA GGGCAATTTG CTAG
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Protein sequence | MKDIFQLVSD YQPAGDQPEA IERLTEGLAA GEMYQTLLGV TGSGKTFTIA NMIQQVQRPT IVLAPNKTLA AQLYSEMREF FPRNAVGYFV SYYDYYQPEA YVPASDTYIG KDASVNDHIE QMRLSATKAF LERPDAIVVA SVSAIYGLGD KDSYLNMVLH LMVGDTVDHR GILRRLAELQ YQRNDRELYR GTYRVRGEII DIYPAESEQE AIRVELFDDE IESLSYFDPL TGEILHRVSR LTIYPKTHYV TPREVLLQAV DEIKIELAER LEQLYGANKL VEAQRLEQRT RFDIEMILEL GYCTGIENYS RFLSRRQPGE APPTLFDYLP KNALLVIDES HVTVPQLGAM YRGDRARKET LVEYGFRLPS ALDNRPLKFE EWEQLAPQTI FVSATPGPYE QQHSGAVIEQ VVRPTGLVDP AVEVRPAGSQ VDDLLSEIRQ RTAADERVLV TVLTKRMAED LTQYLEQHEV RVRYLHSDID TVERVEIIRD LRLGKFDVLV GINLLREGLD IPEVSLVAIL DADKEGFLRS ERSLIQTIGR AARNLHGRAI LYGDKVTGSM GRAIAETERR RKKQLAFNET HRIIPRGIQK AVREIIDGVY TPGSGKGHRS PDRVEEKAAE YTRLPPQQLA KRLQQLERQM HKHAQNLEFE QAARLRDEIK RIKGWVFNGA DSASAPRQEN SQARAIC
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