| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1130 |
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| Symbol | |
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| ID | 3706965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 1233104 |
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| End bp | 1236283 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637737631 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_343164 |
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| Protein GI | 77164639 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.121687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTCAG CGTTTTTTAT TGACCGGCCT AAGTTTGCCC TAGTTATATC GCTGGTCATG
CTGCTGGTCG GCGGTATTGC CCTCAGCCTG ATTCCCGTGG CTGAATTTCC TGAAATTACC
CCGCCCCAGG TAACAGTATC GGCCAGCTAT CCCGGCGCCA ACGCCGAGGG TGTGGAGCAG
TCGGTTGCTG TCCCCATCGA GGAGCAAGTC AACGGCGTCG AGGGCATGAG CTATATGTCC
TCAACCAGTT CCAGTGATGG CAGCTACCAG TTGAACATCA CTTTCGAAGT CGGTACCGAT
GCAGATATCG CCGCGGTCAA TGTGCAAAAT CGGGTTGCCG TAGCCAATAC CCAGTTGCCC
CAGGAGGTCA TCCGCCAGGG CCTGACCACC CGCAAGCAGT CCCCTAATAT GTTGTTGATC
GTCAATCTAA TTTCACCCAA GGGTTCACGG GATAGCCTGT TTCTCAGTAA CTATGCCTCG
ATTTATCTAC AGAACCCCCT GGCGCGGATT TCTGGCGTGG GCGATGTTTC CCAATTTGGG
GTCCAGGATT ACGGTATGCG GGTGTGGCTC GACCCTGATC GGCTGACTGC GTTGGGTTTA
ACCGCAAGCG ATGTTGTCAA GGCTATTGAG GAGCAGAATA TTCAAGCGTC CGCTGGCAGC
CTAGGGGCGC CACCATTCAC CAAGGCGCCG CAATTCCAAT ATACCTTGCA GGCCAAGGGG
CGGCTAGCAA CGGTCGAGGA ATTTGAGGAT ATTATTGTCC GGGCCAGTGC CGATGGTTCC
CTTGTGCAGC TTAAGGATAT TGCTCGCCTT GAGTTGGGTT CGCAAAGCTA TAACGCTATT
TCCAAACTTA ATAGCCAACC GGCAGCCTCC ATAGTGGTCT ATCAATCCCC AGGCGCCAAT
GCACTACAGG TTGCCAATCA GATCTACGCT GAGTTGGAAC GCCTGGCGCA AAGCTTCCCC
CCAGATATGG AATATCACAT TCTGTACGAT ACCACTCAGG CGGTGCGGGC ATCGGTACAG
GAAGTCATCA AGACCTTGTT GATTACTTTT GTTTTGGTTG TGGCGGTAAC CTTCCTGTTT
CTGGCCGACT GGCGTTCGAC CCTGATACCG GTTTGCGCGA TTCCGGTTTC CCTGGTGGGC
GCTTTCGCTG CCATGTACGT GTTGGGATTT TCTGCCAATA TCATTACCTT GTTCGCCATG
ATTCTGGCTA TTGGTATCGT GGTTGATGAT TCCATTGTCG TGGTGGAAAA TGTCCAGCGT
ATTATGCGGG AGAATGCCCT AGAGGCGCGT GAGGCCACCC GTCGCGCCAT GGCCGAGATC
ACCGGGCCGG TCATTGCTAC CACTCTGGTG CTGCTTGCTG TCTTCGTGCC GGTATCGTTT
ATGCCTGGTA TCACCGGCCA GCTTTACCAG CAGTTCGCGG TAACTATTTC GGTGGCGGTT
GCGATCTCCT CCCTCAATGC TTTAACCCTG TCACCCGCCC TGTGCCGGTT ATTGCTTAAG
CCTGATTCTG GCCAGACGCA TGGGCTATTG CGCGCTTTCG CGTGGTTGGT GAACAGATTA
CGCAACGGTT ATGTTCGGGT TTGTTCTCTG ATGCTGCGCC ATTTACGGAT CTCGCTGCTG
TTGGTGCTGA CCTTCGTGAT AGTCACCGTA TTTTTGTTTC AGCGTGCGCC TAGCGGTTTT
TTGCCGACCG AGGACAAGGG CGTACTAATG GTCAATGTGC AGCTACCAGA CGGTGCTTCC
CTGGCGCGCA CAGAAGCCGT AATAGATGAG ATAACCCAGA TGACGCGCGA TACTGCCGGT
ATCACTGATG TGATCTCGGT GACTGGTTTC AGTATTCTTG GCGGCGCGGC CTCTAATGCG
GGCCTGGTTA TTCCGATTCT TGCTCCTTGG GATGAGCGTA GCAGTCCTCA ATTGCAATGG
GAGCCTATTC TCGGCCATCT TAATGCCTCT TTGGCTAGCA TCGCTGCCGC TGAAGCCTTC
GCCTTTCCGC CGCCGCCGAT CACGGGGCTA GGTACCGGTG GTGGTATCGA GGCGCAGCTG
CAGGATCTCG GTGGCGGCAG CCCGCAAGAG TTGGCCGCCG CCATGGGTAG CCTAGTATTC
GCGGCTAACC AGCATCCGGC TTTGATGGGG GTGTTTAGCA CCTACTCGGC TAGTGCGCCA
CAGCTCTATT TGGATATCGA CCGTGAGCGG GCAAAAGTGC TCGGGGTTTC CATTGCTGAT
GTATTTACCA CCCTGAGTGC TAATTTGAGT TCGCTCTATG TCAATGATTT CAATCTGTTT
GGCAAAAGCT ACCGGGTTAT GGTGCAAGCC GAGGCCGAAT ACCGCAATGC TATTAAGGAC
ATTGGCAATC TGTATGTGCG CAGTGGCCCT GGTGAAATGG TGCCGCTGCG AGCACTGATC
GACGTTGAAC CCGTTTTGGG GCCGTTGTCG ATTACCCGTT ACAATCAATT TAAGTCGGCC
GCCATCACTG GTAATCCGGC TCCTGGTTAC AGCTCCGGCG AGGCCATCGC CGCGCTGGAG
CAGGTCGCCG CCGAGGCTCT GCCCGAAGGT TACCGCATCG AGTGGACCGG TACCTCCAAG
GAAGAGCTGG CCGCTGGTGC GCTGGTCATT TACATTTTTG CACTTGCTAT CGTTTTCGCT
TATTTATTTT TGGTGGCGCA GTATGAATCC TGGACTTTGC CCTTGGGGGT GATAAGTTCG
GTGGTTTTCG CTCTGTTCGG TGCTCTCTTG CCGGTGGTAA TGTTGCCGTT TCTGGACAAT
AATCTGTATG CGCAAATCGG TATCGTGATG CTGATCGGCT TGGCTAGCAA GAGTGCGATT
CTGATCGTCG AATTTGCCAA GGAGCGGCGC GAGCAGGGGC TGAGTACCCA TGAGGCGGCG
CTGACGGCGG CACGCCTGCG ATTTCGAGCA GTATTAATGA CGGCCTTGTC GTTTATTCTC
GGTGTCAGTC CGTTGTTGTT CGCTAGTGGC GCTGGTGCCG CCAGTCGAAC TTCAGTGGGC
TTCGTAGTGT TTGGCGGTAT GCTTGCCGCC ACGGTGATCG GGATTTTCTT TATCCCGGTG
CTCCATGTGT TGTATCAGGA CATACGTCTA TCCGTCCCCC GTGTCTGGCA GAGGCCTACC
CTGAGACCAG CAAAACTAGT GCCAAAAGAG ACGGAGCAAT CCGATGATGA GCAGGGTTAA
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| Protein sequence | MFSAFFIDRP KFALVISLVM LLVGGIALSL IPVAEFPEIT PPQVTVSASY PGANAEGVEQ
SVAVPIEEQV NGVEGMSYMS STSSSDGSYQ LNITFEVGTD ADIAAVNVQN RVAVANTQLP
QEVIRQGLTT RKQSPNMLLI VNLISPKGSR DSLFLSNYAS IYLQNPLARI SGVGDVSQFG
VQDYGMRVWL DPDRLTALGL TASDVVKAIE EQNIQASAGS LGAPPFTKAP QFQYTLQAKG
RLATVEEFED IIVRASADGS LVQLKDIARL ELGSQSYNAI SKLNSQPAAS IVVYQSPGAN
ALQVANQIYA ELERLAQSFP PDMEYHILYD TTQAVRASVQ EVIKTLLITF VLVVAVTFLF
LADWRSTLIP VCAIPVSLVG AFAAMYVLGF SANIITLFAM ILAIGIVVDD SIVVVENVQR
IMRENALEAR EATRRAMAEI TGPVIATTLV LLAVFVPVSF MPGITGQLYQ QFAVTISVAV
AISSLNALTL SPALCRLLLK PDSGQTHGLL RAFAWLVNRL RNGYVRVCSL MLRHLRISLL
LVLTFVIVTV FLFQRAPSGF LPTEDKGVLM VNVQLPDGAS LARTEAVIDE ITQMTRDTAG
ITDVISVTGF SILGGAASNA GLVIPILAPW DERSSPQLQW EPILGHLNAS LASIAAAEAF
AFPPPPITGL GTGGGIEAQL QDLGGGSPQE LAAAMGSLVF AANQHPALMG VFSTYSASAP
QLYLDIDRER AKVLGVSIAD VFTTLSANLS SLYVNDFNLF GKSYRVMVQA EAEYRNAIKD
IGNLYVRSGP GEMVPLRALI DVEPVLGPLS ITRYNQFKSA AITGNPAPGY SSGEAIAALE
QVAAEALPEG YRIEWTGTSK EELAAGALVI YIFALAIVFA YLFLVAQYES WTLPLGVISS
VVFALFGALL PVVMLPFLDN NLYAQIGIVM LIGLASKSAI LIVEFAKERR EQGLSTHEAA
LTAARLRFRA VLMTALSFIL GVSPLLFASG AGAASRTSVG FVVFGGMLAA TVIGIFFIPV
LHVLYQDIRL SVPRVWQRPT LRPAKLVPKE TEQSDDEQG
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