| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1091 |
|---|
| Symbol | |
|---|
| ID | 3707080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 1195831 |
|---|
| End bp | 1198620 |
|---|
| Gene Length | 2790 bp |
|---|
| Protein Length | 929 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637737593 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_343126 |
|---|
| Protein GI | 77164601 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA ACTATAACCC GCAAGCGATA GAACAATACT GGTACCAGAT CTGGGAGCAG
AAAGGTTATT TTACTCCCCA GGGGAAAGAC TCCTCCTACT GCATTATGAT CCCGCCCCCC
AATGTCACCG GGCACCTCCA TATGGGACAT GCCTTCCAGA GCACCATTAT GGATGCTCTA
ATCCGCTATC ACCGGATGCG AGGGGACGAT ACCCTATGGC AAGTAGGTGC CGACCATGCC
GGAATCGCAA CCCAAATGGT GGTAGAGAAT CAACTAAATG CCGAAGGGAA AACCCGTCAC
GATTTAGGAC GAGAGGCTTT TATCCAGAGA GTGTGGGAGT GGAAGGAACA TTCAGGTGGC
ACCATTACCC GTCAGCTCCG CCGCATGGGA ACCTCCGTGG ATTGGAGTCG GGAACGCTTT
ACCATGGACG AGGGCTTGTC CCAAGCAGTA GGTGAAGTCT TTGTGCGCCT CTATGATGAA
GGACTCCTCT ATCGCGGCAA GCGCTTGGTA AATTGGGACT CGGTACTCCA TACGGCCATC
TCGGATTTGG AGGTTATCTC GGAAGAGGAA AATAGCCACC TTTGGCATAT GCGCTATCCT
CTGTCGGATG GCAGCGGGCA CTTGGTAGTG GCCACCACCC GCCCCGAGAC CATGCTAGGA
GACACGGCAG TGGCGGTCCA TCCGGAAGAC CCCCGCTATC AGCATCTCAT CGGCAAAACG
GTTGCTTTGC CTCTGACAGA TCGCACCATT CCCGTGATTG CCGATGATTA CGTGGAGCCA
GAATTTGGCA GCGGCTGTGT AAAAATCACT CCAGCCCATG ATTTTAACGA CTACGAAGTG
GGACAACGGC ATGGGCTGCC CTTCATCAAC ATTTTTACGG TGGATGCCTC TCTCAACGAA
AACGTCCCTG AGAGATATCG GAACTTGGAC CGCTTCGAGG CCCGCAAGCT TGTCGTAGCC
GATCTGGAAG CCGCCGGTTT ATTAGAGAAA ATTGAAGATC ATAAGTTAAT GGTACCCCGG
GGCGATCGCT CCCGCACCGT CATCGAGCCT TATTTGACCG ATCAGTGGTT CGTCAAAACC
GCCCCCCTGG CCGAGCCTGC GATTCAAGCA GTAGAAAATG GCCAAATCCG CTTTATTCCC
GAAAACTGGA ACAAAATTTA TTTTGAGTGG ATGCGAAACA TTCAAGATTG GTGTATCTCC
CGCCAAATTT GGTGGGGACA CCGGATTCCG GCGTGGTACG ATCCAGAAGG CAAAATCTAT
GTCGCACCCA CGGAAACCCA AGCCCGCCAA AAATACAACC TTCCTCCCGA TCTCCCTTTA
GAACAAGACC CGGATGTACT AGATACCTGG TTTTCATCGG CTCTGTGGCC TTTTTCTACC
TTGGGATGGC CGGAGGACAC ATCCCTGCTG CGAGCGTTCT ACCCTACCAG TGTCCTGGTC
ACCGGATTTG ATATTATCTT TTTCTGGGTG GCCCGGATGA TCATGATGGG CCTGAAATTC
ACAGGAGAGG TTCCCTTCCA CGAAGTCTAT ATTCATGGTC TGGTTCGCGA TGCCGAGGGC
CAGAAGATGT CTAAATCCAA GGGCAATGTC CTTGATCCTC TGGACCTCAT TGATGGCATC
GATCTGGAAA CTTTGGTCAC CAAGCGAACC GGCGGTTTAA TGCAACCAGC CATGGCCAAG
CGCATAGAAA AAGCGACGCG TAAGGAATTT CCCCAGGGAA TTCCCTCTTT TGGCTGCGAT
GCCCTGCGTT TTACCTTCGC TATTCTGGCT ACCCGAGGCC GGGATATCCG CTTCGATTTG
GGCCGAATTG AGGGCTACCG CAATTTCTGC AATAAACTTT GGAATGCGGC ACGCTATGTC
CTGATCAATG TATCTTCGGA AATATCGGTT GAGAGACAAG GCAAGCCGGA GCAGGCCGAA
GAAAATCTCA TGCTAGGCGC CCCAGAACGC TGGATTATTT CCCGCTTCCA CTCAACCACC
CAGGAAGTCA TCGAAGGTAT CGAAAACTAC CGCTTTGATA GAGTTGCCCA GGCGATCTAT
AATTTTACCT GGAACGAGTA TTGCGATTGG TATCTGGAAC TCTCTAAACC GGTGCTCAAT
AACCCGGCCA GTCCAGAAGC CGCCAAGCGG AGAACCCGTC ACACACTGGT ACATGTGCTA
GAAGCCCTGC TACGTCTTGC CCATCCTATC ATTCCTTTTA TTACCGAGGA AATTTGGCAG
CAAGTGGGAC CCTTGGCTGG CCGCCAAGGA AAAACCATTA TGTTGCAACC CTATCCCCAA
CCAGAAATCG ATAAAATCGA TGAAGACGCC GTTGCGGAAA TAGAGTGGGT CATCGCCTTT
GTTACCGGGG TACGCTCCAT CCGTTCCCAA ATGAATATCG CCCCTGGCAA ACCCATTCCC
TTATTGTTAC AAGCCGGAAA GGCCCATGAC CGGACCCGGT TGGAATCTAA TCAAAAATTT
CTCGCGGCCT TAGCTAAACT GGACTCTATT CAATGGTTAA AAGATGAAAC CCCACCGCCT
GCGGCGACTG CCCTGGTAGA CGAACTCAAG CTTCTAATTC CTCTGGCTGG GCTTATCGAC
AAGGAAGCAG AACTTAAACG ACTGGATCGG GAAATGCAGA GAATGCGTAA AGATCTAGCG
CGAGTCCAAG GAAAGCTCGC CAACTCTAAT TATGTGGAGC GGGCTCCAGC CGAGATCGTC
GCAAAAGAAC GCCAGCGGGC ACAGGAAGTA ACTGCTGCCT TAAGCACACT AGAACAACAA
CATGCCGAGA TAACAGATTT AAATCCTTAA
|
|---|
| Protein sequence | MDKNYNPQAI EQYWYQIWEQ KGYFTPQGKD SSYCIMIPPP NVTGHLHMGH AFQSTIMDAL
IRYHRMRGDD TLWQVGADHA GIATQMVVEN QLNAEGKTRH DLGREAFIQR VWEWKEHSGG
TITRQLRRMG TSVDWSRERF TMDEGLSQAV GEVFVRLYDE GLLYRGKRLV NWDSVLHTAI
SDLEVISEEE NSHLWHMRYP LSDGSGHLVV ATTRPETMLG DTAVAVHPED PRYQHLIGKT
VALPLTDRTI PVIADDYVEP EFGSGCVKIT PAHDFNDYEV GQRHGLPFIN IFTVDASLNE
NVPERYRNLD RFEARKLVVA DLEAAGLLEK IEDHKLMVPR GDRSRTVIEP YLTDQWFVKT
APLAEPAIQA VENGQIRFIP ENWNKIYFEW MRNIQDWCIS RQIWWGHRIP AWYDPEGKIY
VAPTETQARQ KYNLPPDLPL EQDPDVLDTW FSSALWPFST LGWPEDTSLL RAFYPTSVLV
TGFDIIFFWV ARMIMMGLKF TGEVPFHEVY IHGLVRDAEG QKMSKSKGNV LDPLDLIDGI
DLETLVTKRT GGLMQPAMAK RIEKATRKEF PQGIPSFGCD ALRFTFAILA TRGRDIRFDL
GRIEGYRNFC NKLWNAARYV LINVSSEISV ERQGKPEQAE ENLMLGAPER WIISRFHSTT
QEVIEGIENY RFDRVAQAIY NFTWNEYCDW YLELSKPVLN NPASPEAAKR RTRHTLVHVL
EALLRLAHPI IPFITEEIWQ QVGPLAGRQG KTIMLQPYPQ PEIDKIDEDA VAEIEWVIAF
VTGVRSIRSQ MNIAPGKPIP LLLQAGKAHD RTRLESNQKF LAALAKLDSI QWLKDETPPP
AATALVDELK LLIPLAGLID KEAELKRLDR EMQRMRKDLA RVQGKLANSN YVERAPAEIV
AKERQRAQEV TAALSTLEQQ HAEITDLNP
|
|---|
| |